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Transcriptomic profiling across the spectrum of non-alcoholic fatty liver disease

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

In this study, we used publically available dataset from gene expression omnibus (GEO):

The pathophysiological mechanisms that drive non-alcoholic fatty liver disease (NAFLD) progression remain poorly understood. This multicenter study characterized the transcriptional changes that occur as liver disease progresses. 216 snap frozen liver biopsies, comprising 206 NAFLD cases with different fibrosis stages and 10 controls were studied. Samples underwent high-throughput RNA sequencing. This study ...

Creator: Govaere O et.al.

Submitter: Hong Yang

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Created: 25th Nov 2021 at 11:10, Last updated: 25th Nov 2021 at 14:50

output/shovill/Serratia/ablast2/210121-markop-433.xlsx

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

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Created: 12th Nov 2021 at 23:36, Last updated: 12th Nov 2021 at 23:36

output/shovill/Serratia/ablast2/210121-markop-433.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:36, Last updated: 12th Nov 2021 at 23:36

output/shovill/Lactococcus/ablast2/210123-markop-435.xlsx

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:36, Last updated: 12th Nov 2021 at 23:36

output/shovill/Lactococcus/ablast2/210123-markop-435.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:36, Last updated: 12th Nov 2021 at 23:36

output/shovill/Enterococcus/ablast2/210127-markop-436.xlsx

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:35, Last updated: 12th Nov 2021 at 23:35

output/shovill/Enterococcus/ablast2/210127-markop-436.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:35, Last updated: 12th Nov 2021 at 23:35

output/shovill/Enterobacter/ablast2/210127-markop-437.xlsx

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:35, Last updated: 12th Nov 2021 at 23:35

output/shovill/Enterobacter/ablast2/210127-markop-437.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:35, Last updated: 12th Nov 2021 at 23:35

output/quast/Serratia/reads_stats/spades.is.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:35, Last updated: 12th Nov 2021 at 23:35

output/quast/Serratia/reads_stats/reads_report.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:34, Last updated: 12th Nov 2021 at 23:34

output/quast/Serratia/reads_stats/reads_report.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:34, Last updated: 12th Nov 2021 at 23:34

output/quast/Serratia/busco_stats/short_summary_spades.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:34, Last updated: 12th Nov 2021 at 23:34

output/quast/Lactococcus/reads_stats/spades.is.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:30, Last updated: 12th Nov 2021 at 23:30

output/quast/Lactococcus/reads_stats/reads_report.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:30, Last updated: 12th Nov 2021 at 23:30

output/quast/Lactococcus/reads_stats/reads_report.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:30, Last updated: 12th Nov 2021 at 23:30

output/quast/Lactococcus/busco_stats/short_summary_spades.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:29, Last updated: 12th Nov 2021 at 23:29

output/quast/Enterococcus/reads_stats/spades.is.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:29, Last updated: 12th Nov 2021 at 23:29

output/quast/Enterococcus/reads_stats/reads_report.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:25, Last updated: 12th Nov 2021 at 23:25

output/quast/Enterococcus/reads_stats/reads_report.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:25, Last updated: 12th Nov 2021 at 23:25

output/quast/Enterococcus/busco_stats/short_summary_spades.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:24, Last updated: 12th Nov 2021 at 23:24

output/quast/Enterobacter/reads_stats/spades.is.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:24, Last updated: 12th Nov 2021 at 23:24

output/quast/Enterobacter/reads_stats/reads_report.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:23, Last updated: 12th Nov 2021 at 23:23

output/quast/Enterobacter/reads_stats/reads_report.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:23, Last updated: 12th Nov 2021 at 23:23

output/quast/Enterobacter/busco_stats/short_summary_spades.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:21, Last updated: 12th Nov 2021 at 23:21

output/quast/Serratia/transposed_report.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:19, Last updated: 12th Nov 2021 at 23:19

output/quast/Serratia/transposed_report.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:18, Last updated: 12th Nov 2021 at 23:19

output/quast/Serratia/report.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:18, Last updated: 12th Nov 2021 at 23:18

output/quast/Serratia/report.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:18, Last updated: 12th Nov 2021 at 23:18

output/quast/Lactococcus/transposed_report.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:18, Last updated: 12th Nov 2021 at 23:18

(v.1.17.1)

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