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4107 Data files visible to you, out of a total of 6131

A.IMG-samples-publish2021-12-13_22-22.xlsx

MIT SRP

Batch sample publishing

Creator: Dikshant Pradhan

Submitter: Dikshant Pradhan

Investigations: MIT SRP

Studies: Excision of mutagenic replication-blocking lesi...

Assays: RaDR Image Machine Learning Analysis – Data Att...

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Created: 13th Dec 2021 at 15:08

WAD_RaDR_roi_extraction_10.1016.j.celrep.2021.108864.zip

MIT SRP

No description specified

Creator: Dikshant Pradhan

Submitter: Dikshant Pradhan

Investigations: MIT SRP

Studies: Excision of mutagenic replication-blocking lesi...

Assays: RaDR Image Machine Learning Analysis – Data Att...

Download

Created: 13th Dec 2021 at 15:03

Crystal structure of Transaminase of gamma-proteobacterium

CEPOPA - Development of sustainable chemoenzymatic processes for optically pure amines from alcohols or alkynes

The structure of was Transaminase of gamma-proteobacterium deposited in PDB under the code: 7p3t

Creator: Eleni Konia

Submitter: Ioannis Metaxas

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

External Link

Created: 14th Nov 2021 at 13:37, Last updated: 27th Nov 2021 at 10:56

Optimum pH and stability

CEPOPA - Development of sustainable chemoenzymatic processes for optically pure amines from alcohols or alkynes

Data of the activity/pH profile of the under study enzymes

Creator: Eleni Konia

Submitter: Ioannis Metaxas

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2021 at 13:49, Last updated: 27th Nov 2021 at 10:56

Photometric determination of activity

CEPOPA - Development of sustainable chemoenzymatic processes for optically pure amines from alcohols or alkynes

Data for the photometric determination of the activity for the under study enzymes.

Creator: Eleni Konia

Submitter: Ioannis Metaxas

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2021 at 13:55, Last updated: 27th Nov 2021 at 10:56

Pyridoxamine phosphate formation assay

CEPOPA - Development of sustainable chemoenzymatic processes for optically pure amines from alcohols or alkynes

Data file for the Pyridoxamine phosphate formation assay

Creator: Eleni Konia

Submitter: Ioannis Metaxas

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 23rd Nov 2021 at 08:20, Last updated: 27th Nov 2021 at 10:56

Kinetic resolution

CEPOPA - Development of sustainable chemoenzymatic processes for optically pure amines from alcohols or alkynes

Data files for the kinetic resolution assay

Creator: Eleni Konia

Submitter: Ioannis Metaxas

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 23rd Nov 2021 at 08:24, Last updated: 27th Nov 2021 at 10:56

Genome-wide transcriptomics analysis on mice liver tissue samples

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

(Show All)

We performed network analysis to investigate the dysregulated biological processes in the disease progression and revealed the molecular mechanism underlying NAFLD C57BL/6J mice were fed a standard mouse chow diet and housed in a 12‐h light–dark cycle. From the age of 8 weeks, the mice were then divided into two groups of 5 mice fed with chow diet, 4 mice fed with high-sucrose diet for 3 weeks, respectively. At the age of 11 weeks, we performed a genome-wide transcriptomic analysis on tissue ...

Creators: Hong Yang, Adil Mardinoglu, Jan Boren

Submitter: Hong Yang

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Created: 25th Nov 2021 at 11:05, Last updated: 25th Nov 2021 at 15:10

Gene expression predicts histological severity and reveals distinct molecular profiles of nonalcoholic fatty liver disease

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

In this study, we used publically available dataset from gene expression omnibus (GEO):

Transcriptomic analysis of liver biopsies that cover the spectrum of nonalcoholic fatty liver disease reveals genes that are progressively regulated over the course of the disease. This study demonstrates that progressive changes in expression of these genes can be used to approximate the histological grade of a liver biopsy. Furthermore, the relative progression profiles of these disease-responsive genes are ...

Creator: Hoang SA et.al.

Submitter: Hong Yang

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Created: 25th Nov 2021 at 11:14, Last updated: 25th Nov 2021 at 14:52

Transcriptomic profiling across the spectrum of non-alcoholic fatty liver disease

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

In this study, we used publically available dataset from gene expression omnibus (GEO):

The pathophysiological mechanisms that drive non-alcoholic fatty liver disease (NAFLD) progression remain poorly understood. This multicenter study characterized the transcriptional changes that occur as liver disease progresses. 216 snap frozen liver biopsies, comprising 206 NAFLD cases with different fibrosis stages and 10 controls were studied. Samples underwent high-throughput RNA sequencing. This study ...

Creator: Govaere O et.al.

Submitter: Hong Yang

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Created: 25th Nov 2021 at 11:10, Last updated: 25th Nov 2021 at 14:50

output/shovill/Serratia/ablast2/210121-markop-433.xlsx

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:36, Last updated: 12th Nov 2021 at 23:36

output/shovill/Serratia/ablast2/210121-markop-433.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:36, Last updated: 12th Nov 2021 at 23:36

output/shovill/Lactococcus/ablast2/210123-markop-435.xlsx

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:36, Last updated: 12th Nov 2021 at 23:36

output/shovill/Lactococcus/ablast2/210123-markop-435.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:36, Last updated: 12th Nov 2021 at 23:36

output/shovill/Enterococcus/ablast2/210127-markop-436.xlsx

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:35, Last updated: 12th Nov 2021 at 23:35

output/shovill/Enterococcus/ablast2/210127-markop-436.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:35, Last updated: 12th Nov 2021 at 23:35

output/shovill/Enterobacter/ablast2/210127-markop-437.xlsx

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:35, Last updated: 12th Nov 2021 at 23:35

output/shovill/Enterobacter/ablast2/210127-markop-437.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:35, Last updated: 12th Nov 2021 at 23:35

output/quast/Serratia/reads_stats/spades.is.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:35, Last updated: 12th Nov 2021 at 23:35

output/quast/Serratia/reads_stats/reads_report.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:34, Last updated: 12th Nov 2021 at 23:34

output/quast/Serratia/reads_stats/reads_report.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:34, Last updated: 12th Nov 2021 at 23:34

output/quast/Serratia/busco_stats/short_summary_spades.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:34, Last updated: 12th Nov 2021 at 23:34

output/quast/Lactococcus/reads_stats/spades.is.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:30, Last updated: 12th Nov 2021 at 23:30

output/quast/Lactococcus/reads_stats/reads_report.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:30, Last updated: 12th Nov 2021 at 23:30

output/quast/Lactococcus/reads_stats/reads_report.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:30, Last updated: 12th Nov 2021 at 23:30

output/quast/Lactococcus/busco_stats/short_summary_spades.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:29, Last updated: 12th Nov 2021 at 23:29

output/quast/Enterococcus/reads_stats/spades.is.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:29, Last updated: 12th Nov 2021 at 23:29

output/quast/Enterococcus/reads_stats/reads_report.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:25, Last updated: 12th Nov 2021 at 23:25

output/quast/Enterococcus/reads_stats/reads_report.tsv

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:25, Last updated: 12th Nov 2021 at 23:25

output/quast/Enterococcus/busco_stats/short_summary_spades.txt

_p_RNAinVAL

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_03_Omics

Studies: _S_02_metagenome_resp

Assays: _A_06_extr_bact-assembly

Download

Created: 12th Nov 2021 at 23:24, Last updated: 12th Nov 2021 at 23:24

(v.1.16.2)

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