BioDare_metadata
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Original BioDare metadata, converted to json format

SEEK ID: https://fairdomhub.org/data_files/9014?version=1

Filename: BioDare_metadata.json

Format: JSON document

Size: 270 KB

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Creators and Submitter

Creators

Not specified

Additional credit

Sarah Hodge

Submitter

Daniel Thedie

License

No license - no permission to use unless the owner grants a licence

Activity

Views: 47 Downloads: 0

Created: 18th Jun 2026 at 14:47

Last updated: 18th Jun 2026 at 14:48

Version History

Version 1 (earliest) Created 18th Jun 2026 at 14:48 by Daniel Thedie

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Daniel Thedie

Projects: Millar group, BioDare1

Institutions: University of Edinburgh, School of Biological Sciences, University of Edinburgh

https://orcid.org/0000-0002-1352-7245

Expertise: Data Management, Python, R, Programming, microscopy, fluorescence protein fusions, Software Engineering

Tools: Data Management, Python, R, Fluorescence and confocal microscopy, Time-lapse fluorescence microscopy Flow cytometry, Fluorecence based reporter gene analyses/single cell analyses

Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.

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Centre for Engineering Biology (prev. SynthSys)

The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.

Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1

Web page: https://biology.ed.ac.uk/centre-engineering-biology

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BioDare1

Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).

Programme: Centre for Engineering Biology (prev. SynthSys)

Public web page: Not specified

Organisms: Not specified

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Millar Andrew

BioDare1

Collection of experiments created by Millar Andrew on the original BioDare and automatically transferred to FAIRDOM Hub.

Submitter: Daniel Thedie

Studies: Millar et al. (2015), TiMet double dawns, TiMet shady nights

Assays: 010514H1, 010514H2, 030413H3: 12B-12Dx4 BB3, 030714H1, 030714H2, 060213H3: 12B-12Dx4 BBx3, 060313H1: 5L15Dx4 LLx3 (T-20), 060313H2: 12F-12Dx4 FFx3, 070814H1, 070814H2, 080115H1, 080115H2, 100414H1, 100414H2, 130212H1: 5L15Dx4 LLx3 (T-20), 130213H3: 12R-12Dx4 RRx3, 130313H1: 14L14D x 4 LL x 3 (T-28), 130313H2: 12F-12Dx4 FFx3, 140515H1, 140515H2, 140814H1, 140814H2, 190614H1, 190614H2, 200213H1: 15L5D x4 LL x3 (T-20), 200213H3: 12B-12Dx4 BB3, 200313H2: 7L 21Dx4 LLx3 (T-28), 200313H3: 12L-12Dx4 LLx3, 210814H1, 210814H2, 240414H1, 240414H2, 270213H1: 10L10Dx4 LLx3 (T-20), 270213H3: 12R-12Dx4 RRx3, 270313H1: 21L 7Dx4 LLx3 (T-28), 270313H3: 12L-12Dx4 LLx3, 280814H1, 280814H2, 290313H2: 15L 5Dx4 LLx3, AT0043: 4x 12:12-DD, AT0048 4x 18:6-DD, AT0078: 4x6:18-DD, AT0080: 4x18:6-DD

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Created: 18th Jun 2026 at 13:24

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TiMet double dawns

BioDare1

None

TiMet double dawns

DOI: None

Submitter: Daniel Thedie

Investigation: Millar Andrew

Assays: 030714H1, 030714H2, 070814H1, 070814H2, 100414H1, 100414H2, 140515H1, 140515H2, 140814H1, 140814H2, 280814H1, 280814H2

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:24

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140515H2

BioDare1

140515H2

Property	Value
BioDare ID	3188
Author	Sarah Hodge
Institution	MPIMP - UEDIN
License

Description

ZT0 lights remain switched off until ZT3. At ZT3 light comes on at 90 umolm-2s-1. Dusk is lights off at ZT 12. Dark dawn cycle is for 4 days then continuous light (first day with dark dawn) for 3 days. ie 9L:15D x4 LLx3.