Instructions and details on the data analysis workflow.
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Created: 24th Jul 2020 at 13:52
Last updated: 24th Jul 2020 at 13:53
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Version 1 (earliest) Created 24th Jul 2020 at 13:52 by Gudrun Gygli
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Projects: Simulation Foundries, CML for thermophysical properties of mixtures, Test Project (dummy), Towards Reproducible Enzyme Modeling
Institutions: University of Stuttgart, Karlsruhe Institute of Technology (KIT)
https://orcid.org/0000-0001-9119-1778Expertise: enzyme kinetics, enzymes, Enzymatic reactions, biochemical enzyme characterization, Biochemistry, molecular simulation, molecular modeling, Programming, Bioinformatics, Computational Biology
Tools: Gromacs, Python, Molecular Dynamics, bash, Biochemistry, Bioinformatics, Biochemistry and protein analysis, Enzyme assay, enzyme kinetics, isothermal titration calorimetry, dynamic light scattering, Spectrophotometry
Polyglot European Scientist. I thrive working in interdisciplinary environments combining the study of enzyme reactions and mechanisms with bioinformatics, molecular modelling, automated data analysis and data stewardship.
This is a collection of deep eutectic solvent (DES) experimental and simulation data that is stored in CML format and analysed using gradient boosting decision trees.
Submitter: Gudrun Gygli
Studies: Choline chloride:glycerol:water mixtures in CML, Meta-analysis of viscosity of aqueous deep eutectic solvents and their c...
Assays: CML processing and analysis, VFT and Arrhenius Modelling
Snapshots: No snapshots
A meta-analysis of the impact of water content and temperature on the viscosities of four deep eutectic solvents (glyceline, reline, DEAG, DEACG), their components (choline chloride, urea, glycerol, ethylene glycol), methanol, and pure water was performed. We analyzed the viscosity data by an automated workflow, using Arrhenius and Vogel–Fulcher–Tammann-Hesse models.
Snapshots: Snapshot 1
Submitter: Gudrun Gygli
Biological problem addressed: Model Analysis Type
Investigation: Deep Eutectic Solvents
Organisms: No organisms
Models: No Models
SOPs: Instructions for using the workflow
Data files: Defining names, Modelling Workflow, Results of modelling analysis, Viscosity data input, Wrapper script
Snapshots: No snapshots