Projects

Learning how to work with fairdomhub

supplementary information: figures and tables

New Optical Coherence Tomography Biomarkers Identified with Deep Learning for Risk Stratification of Patients with Age-related Macular Degeneration

This project collects and maintains metadata templates designed and used at the UMass Chan BioImage DMS Core and built in collaboration with the CBI Open Science Project. The templates are based on the REMBI recommendations and on the NBO-Q Microscopy Metadata specifications. These templates contribute to FAIR bioimaging data in North America, and are meant to be utilized to support image data annotation in the OMERO database.

This project stored supplementary files that we didn't include in the paper ' Exploring the Evolution of the Gene Ontology and itsImpact on Enrichment Analysis'

Ionizing radiation (IR) leads to DNA double-strand breaks and can therefore be used as cancer treatment. However, some tumors are less responsive to radiation treatment because of their underlying molecular profile. Our ultimate goal is to understand the reaction of lung cancer cells with different phenotypes to IR on a molecular level to then provide the best therapy options for lung cancer patients with IR therapy.

FUNCEMM is a project bringing together 2 teams from France and Austria focusing on synthetic methylotrophy.

The BioRECIPE (Biological system Representation for Evaluation, Curation, Interoperability, Preserving, and Execution) knowledge representation format was introduced to facilitate seamless human-machine interaction while creating, verifying, evaluating, curating, and expanding executable models of intra- and intercellular signaling. This format allows a human user to easily preview and modify any model component, while it is at the same time readable by machines and can be processed by a suite ...

nfdi4health aims to create the most comprehensive inventory of German epidemiological, public health and clinical trial data to date. It builds a centralised data catalogue with elaborate search functionalities, sophisticated data access management, and a data analysis toolbox, while respecting stringent requirements for privacy concerning personal health data. Standardisation services ensure a high degree of interoperability. Use cases covering prototypical study types and areas of research show ...

SDBV group using Hub

Based on the combination of sensor and big data revolutions, PHENET (HE INFRA-TECH) will equip crop and ecosystems RI with innovative services based on tools and methods developed in the frame of the project and allowing enhanced capacity to future-proofing agroecosystems. These services will be excellent tools for users addressing environmental and societal challenges such as climate change adaptation / mitigation and agroecology transition.

Further proteomic data and ATP calculation

Development of a lactic acid centred biorefinery scheme to valorize flexibly organic waste streams into biochemicals

Testing out FAIRDOM-Seek

Cyanobacteria are the only prokaryotes performing oxygenic photosynthesis. Theyhad and have tremendous influence on the biogeochemical cycles on Earth. Recently,cyanobacteria are increasingly investigated as cell factories for a sustainableeconomy. Despite their global, environmental and rising economic importance, ourknowledge on the regulation of their primary metabolism is fragmented.Cyanobacteria switch between photoautotrophic and heterotrophic modes ofmetabolism during day/night cycles or ...