Data files

52 Data files visible to you, out of a total of 52

L. lactis cultures were grown at different dilution rates in glucose-limited chemostat conditions and were analyzed with respect to physiological parameters. Amino acid consumption, glucose consumption and production of fermentation products were measured in steady-state conditions,

Creator: Martijn Bekker

Submitter: Martijn Bekker

Output of the 3D-structures modeled by comparative modeling tool for LDH enzymes from four LABs (in the PDB format, tarred). Four LABs include Enterococcus faecalis, Lactococcus lactis, Streptococcus pyogenes and Lactobacillus plantarum. Output of the SEEK Model https://seek.sysmo-db.org/models/118.

The modeling was performed against a x-ray structure of LDH from B. stearothermophilis (template, PDH ID: 1LDN).

Output files of phosphate probe binding on the surface of LDH from lactococcus lactis type 1. File with extension XPLOR can be visualized with a program VMD to identify the most favorable position for the phosphate binding. This relates to the Model "Part 4".

The Table represents the simulation results of how the presence of phosphate ions (Pi) in the solution might affect the activity of four LDH enzymes. This includes the algorithmic analysis of the binding energies values computed by the GRID program (see Part 4, model) for each enzyme in presence and absence of FBP molecule at pH 6 and 7. The analysis was performed by using the algorithm proposed in Part 5, model.

No description specified

L. lactis was grown in rich THY medium, strongly concentrated and glucose-pulsed in a MES buffer. Intracellular metabolite concentration is followed in time.

Lactobacillus plantarum JDM1 differentially expressed proteins, comparison between low and high growth rates

Creator: Anette McLeod

Submitter: Anette McLeod

Lactobacillus plantarum ATCC 14917 differentially expressed proteins, comparison between low and high growth rates

Creator: Anette McLeod

Submitter: Anette McLeod

Lactobacillus plantarum strains WCFS1, NC8, JDM1 and ATCC 14917 amino acid concentrations mM supernatant, high (D=0.4) and low (D=0.05) growth rates

Creator: Anette McLeod

Submitter: Anette McLeod

Heterologous Expression of LDH from L.actis (MG1363) in E. coli DH5α. Assessment of kinetic parameters of LDH to include in a catabolic model

Creator: Wayne Aubrey

Submitter: Wayne Aubrey

Lactobacillus plantarum, 4 strains (WCFS1, NC8, ATCC 14917, JDM1) chemostat experiments low and high growth rates, OD and DW measurements

Creator: Anette McLeod

Submitter: Anette McLeod

Lactobacillus plantarum strains WCFS1, NC8, ATCC14917, JDM1. HPLC end products mM measurements (CDM subtracted) and flux calculations, high and low growth rates.

Creator: Anette McLeod

Submitter: Anette McLeod

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

amino acid auxotrophies as determined for S. pyogenes, E. faecalis, L. lactis and L. plantarum (ATCC, NC8, JDM1 and WCFS1) subsequent inoculation (3x) in CDM

Creator: Koen van Grinsven

Submitter: Koen van Grinsven

Vmaxes E. faecalis from chemostat cultures, D0.05, D0.15 en D0.4 triplicates for every growthrate, measured in in-vivo-like assay (Goel, Teusink, AEM, 2012) glycolytic enzymes + LDH + acetate/EtOH branch

Creator: Koen van Grinsven

Submitter: Koen van Grinsven

raw data OD600 of amino acid auxotrophy exps S. pyogenes

Creator: Koen van Grinsven

Submitter: Koen van Grinsven

raw data OD600

Creator: Koen van Grinsven

Submitter: Koen van Grinsven

Lactobacillus plantarum WCFS1 differentially expressed proteins, comparison between low and high growth rates

Creator: Anette McLeod

Submitter: Anette McLeod

Lactobacillus plantarum NC8 differentially expressed proteins, comparison between low and high growth rates

Creator: Anette McLeod

Submitter: Anette McLeod

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

amino acid auxotrophy for streptococcus pyogenes in CDM-IMIKRO (not CDM-LAB) as function of final growth yield (OD600 at stationary phase) in 96well plates (200 ul culture)

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