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4280 Data files visible to you, out of a total of 6546

/scripts/01.1_commands-CDHIT-EST.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:54, Last updated: 19th Mar 2020 at 10:54

/output/trueSingle.polyploid.ID

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:52, Last updated: 19th Mar 2020 at 10:52

/output/trueSingle.DM.ID

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:52, Last updated: 19th Mar 2020 at 10:52

/intermediate/stPanTr_aa_singletons_tetra_on_DM_aS.45_c.90.clstr

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:50, Last updated: 19th Mar 2020 at 10:50

/intermediate/stPanTr_aa_singletons_DM_on_tetra_aS.45_c.90.clstr

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:50, Last updated: 19th Mar 2020 at 10:50

/intermediate/stCuSTr_cds_repAlt_cdhitEST-conda_aS.75_c.90.clstr

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:50

/intermediate/singletons.tetra.seqID.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:50, Last updated: 19th Mar 2020 at 10:50

/intermediate/singletons.seqID.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:50

/intermediate/singletons.DM.seqID.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/input/StPGSC4.04n_seq_4_PGSC-p-rep_ITAG-pep_gff-2019-04-23.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49

/input/Solanum_tuberosum_PGSC_DM_v4.04_converterWithDescriptions.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49

/input/Solanum_tuberosum_ITAG_DM_v1_descriptions_v2.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/input/path_to_files.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/scripts/tab_to_fasta.py

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/scripts/GC_content.py

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/output/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gff-2019-04-23.GC_len.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:48

/output/Solanum_tuberosum_PGSC_merged.CDS_GC.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:48

/output/Solanum_tuberosum-ITAG_DM_v1_cds_GC.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/input/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gff-2019-04-23.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/input/Solanum_tuberosum_PGSC_merged.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/input/Solanum_tuberosum-ITAG_DM_v1_cds.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:48

Top100 transcripts

iRhythmics

This file contains the top 100 transcripts for the identified cell types in the integrated dataset.

Creator: Anne-Marie Galow

Submitter: Anne-Marie Galow

Investigations: 1 hidden item

Studies: integrative cluster analysis - proliferative ca...

Assays: integrative cluster analysis of single cell and...

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Created: 18th Mar 2020 at 15:09, Last updated: 19th Mar 2020 at 09:53

/output/Rywal_tr.cds.tsv.gz

_p_stRT

Supplementary Table S5 Rywal biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Rywal.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3112.1

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 18:19, Last updated: 18th Mar 2020 at 18:26

/output/Desiree_tr.cds.tsv.gz

_p_stRT

Supplementary Table S3 Désirée biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Désirée.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3110.1

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 18:15, Last updated: 18th Mar 2020 at 18:25

/output/PW363_tr.cds.tsv.gz

_p_stRT

Supplementary Table S4 PW363 biological evidence filtering results. Output of 1st filtering step by biological evidence for breeding clone PW363.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3111.1

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 18:17, Last updated: 18th Mar 2020 at 18:25

HepG2_protein_cell_0mM_6mMGlc

IMOMESIC

No description specified

Creator: Jurgen Haanstra

Submitter: Jurgen Haanstra

Investigations: Metabolism of HepG2 liver cancer cells

Studies: protein per cell for HepG2 cells

Assays: Cell counts and BCA Protein

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Created: 10th Mar 2020 at 12:48, Last updated: 10th Mar 2020 at 12:51

HepG2 | cell counts and metabolite levels over time at 0, 6 or 22 mM glucose

IMOMESIC

No description specified

Creator: Jurgen Haanstra

Submitter: Jurgen Haanstra

Investigations: Metabolism of HepG2 liver cancer cells

Studies: Measurements of metabolism of HepG2 cells at 0 ...

Assays: Cell counts and metabolite levels

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Created: 6th Mar 2020 at 09:02, Last updated: 9th Mar 2020 at 08:47

Cell counts and metbolites for HepG2 cells with or without SSZ inhibition

IMOMESIC

No description specified

Creator: Jurgen Haanstra

Submitter: Jurgen Haanstra

Investigations: Metabolism of HepG2 liver cancer cells

Studies: Inhibition with Sulfasalazine (SSZ)

Assays: Inhibition experiment for the effect of SSZ on ...

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Created: 6th Mar 2020 at 09:18, Last updated: 9th Mar 2020 at 08:47

Nuclei characteristics for the single nuclei analysis of Fzt:DU and BL6 mice

iRhythmics

File contains the detailed cluster names for each data set, number of nuclei per cluster, average reads per nucleus, and average reads per cluster.

Creator: Markus Wolfien

Submitter: Markus Wolfien

Investigations: 1 hidden item

Studies: Single nuclei comparison

Assays: Single nuclei RNA-Seq analysis of Fzt:DU and BL...

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Created: 16th Jan 2020 at 14:36, Last updated: 27th Feb 2020 at 11:07

Rawdata RNAseq

SysMetEx

Umbrella study for all RNAseq rawdata Separate projects can be accessed under "component projects"

Creator: Malte Herold

Submitter: Malte Herold

Investigations: SysMetEx - Dataset collection

Studies: Biofilms on chalcopyrite grains, Continuous cultures, Planktonic cells

Assays: RNAseq rawdata, RNAseq rawdata, RNAseq rawdata

External Link

Created: 6th May 2019 at 13:46, Last updated: 12th Feb 2020 at 12:27