input/Prioritization_filteredRBB/output/organism_NGS_to_PIS/PIS_dinar_comparison_high12-wt.txt Version 1
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_DiNAR/_A_PIS_NbL35-DiNAR/
SEEK ID: https://fairdomhub.org/data_files/5562?version=1
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input/Prioritization_filteredRBB/output/organism_NGS_to_PIS/PIS_dinar_comparison_high12-wt.txt
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probeID clade LogFC_high12.wt pAdj_high12.wt NbL01g24240 4CLL 1.5 1e-04 NbL07g08900 AAO 0 0 NbL14g31500 ACH 0.35 0.0452 NbL10g03910 ACO 4.77 1e-04 NbL13g00560 ACS1,2,6 -0.01 0.9702 NbL10g26760 ACS10 -2.04 0 NbL06g18000 ACS12 -0.09 0.5147 NbL15g12390 ACX1,5 1.39 0 NbL02g01390 ACX2 1.98 0.0247 NbL18g05560 ACX3,6 1.13 0 NbL15g03330 ACX4 0.97 0 NbL19g15530 ADT 0 0 NbL06g12570 AGO1,5,7,10 0.33 0.0375 NbL09g13630 AGO4,6,8,9 -0.59 0.0202 NbL19g28690 AOC 0.52 0.0168 NbL17g11130 AOS -0.19 0.5977 NbL10g23270 AOX1 0.79 0.0022 NbL02g10730 APK 0.44 0.0067 NbL03g08950 APX-TS -0.78 0 NbL05g05650 APX1,2 0.85 9e-04 NbL18g12260 APX3 -0.86 1e-04 NbL11g16060 APX4 -4.57 0 NbL07g18370 APX6 -1.02 0 NbL10g05120 ARF1..22 1.91 0 NbL02g24980 ARF3 0 0 NbL07g21730 ARF4 -0.7 0.021 NbL09g29080 ASK 1.41 0 NbL01g18610 ATPB 0.58 0.0114 NbL15g00040 BRI1 0.41 0.0192 NbL15g21820 BRL 2.02 0 NbL01g07870 C19-GA2ox 4.24 1e-04 NbL12g21430 CAMTA 0.82 0.0015 NbL03g16380 CAT1,2,3 1.81 0.0161 NbL09g18700 CLH 0.13 0.5761 NbL13g23270 CM 0.58 0 NbL01g19070 CML42 0.84 0.0043 NbL10g14460 COI1 0.89 0 NbL03g03250 CPK1 0.53 0.0095 NbL04g17150 CPK15 0 0 NbL16g29590 CPK29 -3.2 0 NbL12g19930 CPK4,5,6,11 0.4 0.009 NbL05g10880 CPK9 0 0 NbL18g13500 CRT1,2 -1.15 9e-04 NbL10g10300 CRT3 0.7 0.001 NbL05g03430 CTR 0.52 0.015 NbL02g01570 CTS 0.45 0.0071 NbL09g18350 CUL 0.81 0.001 NbL14g27350 CYP94 2.3 0 NbL15g29060 DNAJ 1.17 0 NbL04g14050 DXPS -4.14 0 NbL10g00840 EBF 0.37 0.0115 NbL01g17390 EDF -2.86 0 NbL09g28720 EDS5 0.96 5e-04 NbL15g30150 EIN2 1.72 0.0043 NbL09g13830 EIN3(EIL1) 1.47 0 NbL16g21160 EMS 0 0 NbL09g00220 ETR 0.85 0.0353 NbL16g21790 GA20ox -6.34 0 NbL15g13250 GA3ox 0 0 NbL18g10530 GID1a,b,c 3.35 0 NbL17g32670 GPX 1.69 0 NbL03g02560 GRAS2 0.4 0.0211 NbL04g04790 GSNO 0.58 0.0498 NbL12g00740 GST 2.06 0 NbL17g32640 HMA -1.2 2e-04 NbL02g12040 HMGR 1.91 1e-04 NbL18g26530 HSP17,18 1.12 0 NbL16g29790 HSP90 0.44 0.0218 NbL09g07710 ICS -1.54 0 NbL08g04130 IEGT 1.5 0 NbL10g24390 JAR 1.12 0 NbL19g29560 JMT 6.06 0.0093 NbL04g05200 KAT 1.79 0 NbL07g13220 KS 2.98 0 NbL16g19850 LOX 2.46 0.0107 NbL16g34760 LRR -1.98 0 NbL04g08960 MES 0.5 0.0148 NbL15g25870 MFP 1.2 1e-04 NbL16g15670 MKK3 0.72 0.0098 NbL08g15160 MOS 0.7 0.0042 NbL01g04090 MPK13 0 0 NbL12g03150 MPK3 0 0 NbL10g28220 MPK4 -1.71 0 NbL18g22980 MPK6 0.54 0.0017 NbL15g25320 NAC19,55,72 2.64 0 NbL17g33490 NADPH-oxidase 1.57 0 NbL19g08990 NAK 0 0 NbL12g02250 NDA -4.54 0 NbL02g26510 NDB 0 0 NbL10g14540 NDC -0.57 1e-04 NbL01g12100 NIK -2.71 0 NbL11g22460 NPR 1.61 0 NbL10g12580 OBE 0.85 1e-04 NbL09g23990 OMR1 -0.64 0.0064 NbL17g02560 OPR 0.68 5e-04 NbL12g21970 PA -0.73 0.0067 NbL14g03190 PAA 0.63 8e-04 NbL08g31120 PAL 0 0 NbL13g19640 PBB 1.39 3e-04 NbL16g21060 PBE 0.5 0.0064 NbL14g19230 PPL -7.4 0 NbL08g00470 PR1 3.51 0.0059 NbL06g21250 PR3 3.62 0.0046 NbL08g11760 PR4 4.01 5e-04 NbL14g25990 PSAK -4.6 0 NbL18g03130 RANGAP -0.93 0 NbL07g09390 RAR1 0.72 2e-04 NbL02g19000 RBCS -4.18 0 NbL14g03160 RBX 0 0 NbL05g24950 RGA1,2 -1.55 0 NbL10g24850 RH 0.3 0.0149 NbL07g15420 RPL17 -1.28 1e-04 NbL07g17000 RPL7 -0.68 0.1934 NbL08g30600 SAHH -2.15 0 NbL02g00660 SAMC -1.41 0 NbL05g04540 SAMS -1.1 0 NbL16g24960 SERK 0.75 0.0012 NbL16g19960 SGT1 0.7 0.0397 NbL17g09960 SOD -1.47 0 NbL19g11630 SR1IP 1.16 0.0034 NbL07g00220 TDX 0.48 0.0212 NbL12g22250 TGA1,4 3.71 0.0048 NbL19g13020 TGA2,5,6 1.56 0 NbL04g19740 TGA3,7 2.01 0 NbL15g22710 UPL1,2 0 0 NbL09g29000 UPL3,4 0 0 NbL05g03960 UPL6,7 1.16 0 NbL04g09870 VDAC1 0.32 0.0389 NbL06g14600 WD40 0.66 0.0207 NbL19g11360 WRKY33 0 0 NbL01g15620 WRKY57 0 0 NbL01g02880 XDH 0 0 NbL11g12660 XRN -0.89 1e-04
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Created: 12th Apr 2022 at 09:43
Last updated: 21st Sep 2022 at 10:46
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Version 1 (earliest) Created 12th Apr 2022 at 09:43 by Marko Petek
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https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Short Name: T21_SXPsysbio Title: Use a systems biology approach to identify regulatory bottlenecks in SxPv1 Description: Samples from SXPv1.0 plants as well as sister nulls (progeny from the original transgenic event in which the transgene has segregated) and wild type will be grown and leaf samples taken for RNA extraction and profiling of primary metabolites and volatiles (target pheromones as well as potential derivatives) (P1, P5). Phenotypic and GC-MS data will be obtained and analysed from ...
Submitter: Marko Petek
Studies: Investigation files, _S_P1_SPv10T0andT1, _S_P1_SPv10T2andT3, _S_P1_SPv1TransientExp, _S_P1_SxPAltAcTransferases, _S_P1_SxPv10vsSxP12, _S_P1_SxPv12T2, _S_P4_CoExpNetViz, _S_P4_DiNAR, _S_P4_GAtreat, _S_P4_SxP10-newG-DE, _S_P4_SxP10-oldG-DE, _S_P4_SxP1012-finalG, _S_P4_SxP12-newG-DE
Assays: _A_00_SxP_photos-phenotyping, _A_01_RNA1-RNAisol, _A_01_SxP_Data_Only-CoExp, _A_01_SxPv12_fastq-QC, _A_01_mapping-CLC, _A_01_toNewGenome-CLC-mapping, _A_02_FastQC-bioinfo, _A_02_Nb_datasets-CoExp, _A_02_SxPv12_mapping-CLC, _A_02_limmavoomDE-R, _A_02a_limmavoom-multim-R, _A_02a_limmavoomDEbylines-R, _A_02b_limmavoom-uniquem-R, _A_03_MapMan-visualisation, _A_03_NewGenome-MapMan, _A_03_SxPv12_limmavoom_DE-R, _A_03_mapping-CLC, _A_03a_mapping2-STAR, _A_04_GSEA-Stat, _A_04_MapManBINenrich-GSEA, _A_04_Mercator-bioinfo, _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA, _A_05_DEstat-R, _A_05_Phenotype_analysis-Stat, _A_05_VOCcomp-Bioinfo, _A_05a_DEstat2-R, _A_05b_DElow-wt-R, _A_06_MapMan-bioinfo, _A_06_SxPv1-0_Illumina-Centrifuge, _A_07_NbAUSv1-0-InterPro, _A_07_transgenes-CLC, _A_CKN-DiNAR, _A_CKN_NbL35-DiNAR, _A_LeavesSxPv10vsv12-GCMS, _A_P4_v10v12-phenotyping, _A_PIS-DiNAR, _A_PIS-SxPv12-DiNAR, _A_PIS_NbL35-DiNAR, _A_RootsSxPv10vsv12-GCMS, _A_SP10T0Analysis-GCMS, _A_SP10T1Analysis-GCMS, _A_SPv10EaDActAnalysis-GCMS, _A_SPv10T2Analysis-GCMS, _A_SPv10T3Analysis-GCMS, _A_SPv10_phenotyping-Images, _A_SxPAlternativeAcetyltransferases-GCMS, _A_SxPv10vsv12-phenotyping, _A_SxPv12ScreeningT2-GCMS, _A_TransientSPv11andSPv12-GCMS, _I_T21_SXPsysbio-files, _S_P1_SPv10T0andT1-files, _S_P1_SPv10T2andT3-files, _S_P1_SPv1TransientExp-files, _S_P1_SxPAltAcTransferases-files, _S_P1_SxPv10vsSxP12-files, _S_P1_SxPv12T2-files, _S_P4_CoExpNetViz-files, _S_P4_DiNAR-files, _S_P4_GAtreat-files, _S_P4_SxP10-newG-DE-files, _S_P4_SxP10-oldG-DE-files, _S_P4_SxP1012-finalG-files, _S_P4_SxP12-newG-DE-files
Short Name: DiNAR Title: DiNAR analyses of SxP DE data Description: DiNAR visualisation of SxPv1.0 and SxPv1.2 expressoin data in either PIS or CKN networks. Raw Data: Principal investigator: Ĺ pela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Investigation: _I_T21_SXPsysbio
Assays: _A_CKN-DiNAR, _A_CKN_NbL35-DiNAR, _A_PIS-DiNAR, _A_PIS-SxPv12-DiNAR, _A_PIS_NbL35-DiNAR, _S_P4_DiNAR-files
Short Name: PIS_NbL35-DiNAR Assay Class: DRY Assay Type: DiNAR Title: DE genes of SxP v1.0 and v1.2 visualisation in DiNAR Description: As input, DE genes determined by contrasting phenotype groups without outliers were used. Mapping to Nb genome v3.5. Visualisatoin in PIS network. pISA Assay creation date: 2022-01-30 pISA Assay creator: Mojca Juteršek Phenodata: None Featuredata: Data:
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T21_SXPsysbio
Study: _S_P4_DiNAR
