_A_SxPv12ScreeningT2-GCMS

Short Name: SxPv12ScreeningT2-GCMS Assay Class: WET Assay Type: GCMS Title: Screening of sex pheromone production in SexyPlant v1.2 T2 transgenic generation for further RNASeq analysis. Description: The purpose of this study is to screen the population of T2 transgenic generation of SxPv1.2, to analyze the production of moth sex pheromones in these plants and be able to choose from them the most interesting ones in terms of production for further RNASeq analysis. pISA Assay creation date: 2021-12-09 pISA Assay creator: RMF Lab manager: DO Sample collection protocol: Leaf samples were collected at 4 weeks after transplant for young stage and at 7 weeks for adult stage (early flowering). Samples were collected between 4 and 6 pm, frozen in liquid nitrogen immediately after collection, and ground afterwards. Extraction protocol: 50mg of frozen, ground leaf samples were weighed in a 10mL headspace screw-cap vial and stabilized by adding 1mL of 5M CaCl2 and 150 ćL of 500mM EDTA (pH = 7.5), after which they were sonicated for 5 minutes. Volatile compounds were captured by means of headspace solid phase microextraction (HS-SPME) with a 65 ćm polydimethylsiloxane/divinylbenzene (PDMS/DVB) SPME fiber (Supelco, Bellefonte, PA, USA). Volatile extraction was performed automatically by means of a CombiPAL autosampler (CTC Analytics). Vials were first incubated at 80řC for 3 minutes with 500 rpm agitation. The fiber was then exposed to the headspace of the vial for 20 min under the same conditions of temperature and agitation. Desorption was performed at 250řC for 1 min (splitless mode) in the injection port of a 6890N gas chromatograph coupled to a 5975B mass spectrometer (Agilent Technologies). After desorption, the fiber was cleaned in a SPME fiber conditioning station (CTC Analytics) at 250řC for 5 min under a He flow Chromatography protocol: Chromatography was performed on a DB5ms (60 m, 0.25 mm, 1 ćm) capillary column (JandW) with helium as the carrier gas at a constant flow of 1.2mLxmin-1. The oven conditions started with an initial temperature of 160řC for 2 min, 7řCmin-1 ramp until 280řC, and a final hold at 280řC for 6 minutes. Mass spectrometry protocol: Electron impact ionization (EI), 70 eV ionization energy, MS source temperature 230řC, MS quadrupole temperature 150řC, single quadrupole detector, m/z range 35-300. Phenodata: ../../phenodata_20210603.txt Featuredata: Creation date: 2021-06-03 Extract ID: $_extr Extraction Method: HS-SPME Date Extraction: 2021-06-03 Derivatization or Labelling: none Date Derivatization or Labelling: 2021-06-03 Derivatized or labeled Extract ID: $_extrD Other Post Extraction Procedures: Storage: Date GC-MS Run: 2021-06-03 GC Instrument: 6890N gas chromatograph (Agilent Technologies) GC Autosampler Model: CombiPAL autosampler (CTC Analytics) GC Column model: DB5ms (60m, 0.25 mm, 1um) capillary column (JandW) GC Column type: capillary column Guard Column: MS Scan polarity: positive MS Scan mz range: 35-300 MS Instrument: 5975B mass spectrometer (Agilent Technologies) MS Ion source: electron ionization (EI) Mass analyzer: quadrupole mass filter Operator: RMF Notes: Data: https://doi.org/10.5281/zenodo.5810534

SEEK ID: https://fairdomhub.org/assays/1688

Experimental assay

Marko Petek

Projects: SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Contr...

Investigation: _I_T21_SXPsysbio

Study: _S_P1_SxPv12T2

Assay position:

Assay type: Experimental Assay Type

Technology type: Technology Type

Organisms: No organisms