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Projects: MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, INDIE - Biotechnological production of sustainable indole, _p_stRT

Institutions: National Institute of Biology

https://orcid.org/0000-0003-0913-2715

Expertise: Bioinformatics, Data Management, Dynamic modelling, Systems Biology, Transcriptomics, Data Integration

Tools: Bioinformatics, Computational Systems Biology, Databases, Dynamic modelling, Microarray analysis, ODE, R

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NIBSys

National Institute of Biology, Department of Biotechnology and Systems Biology projects

Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground

Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology

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MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

Time series response of potato cv. Désirée, which is tolerant to PVY infection, was analysed in both inoculated as well as upper non-inoculated leaves. Additionally, transgenic plants deficient in accumulation of salicylic acid (NahG- Désirée) were studied in the same setting.

This investigation is published under the CC BY 4.0 license.

Programme: NIBSys

Public web page: Not specified

Organisms: Potato virus Y, Solanum tuberosum

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MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

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Time series response of potato cv. Désirée, which is tolerant to PVY infection, was analysed in both inoculated as well as upper non-inoculated leaves. Additionally, transgenic plants deficient in accumulation of salicylic acid (NahG- Désirée) were studied in the same setting.

All the files available are published under the CC BY 4.0 license.

Submitter: Ziva Ramsak

Studies: MOA2010-05, MOA2013-12

Assays: Degradomics, Disease symptoms, Hormone concentrations, Pathogen abundance, Photosynthetic activity, Proteomics, Transcriptomics (microarrays), Transcriptomics (qPCR), sRNAomics (bioinformatics), sRNAomics (qPCR), sRNAomics (sRNA-Seq)