Boolean Network Simulation
A boolean network was created using booleannet (after experimenting with Squad and CellNetAnalyzer). This network can be simulated and visualized using additional software components that will be part of the pyMantis CMS that is developed by the Translucent project.
SEEK ID: https://fairdomhub.org/assays/78
Modelling analysis
Projects: TRANSLUCENT
Investigation: ENA1 Transcription in Saccharomyces cerevisiae
Study: Modelling of the Signaling network regulating the ENA1-gene transcription
Assay position:
Biological problem addressed: Gene Regulatory Network
Organisms: Saccharomyces cerevisiae : BY4741 (wild-type / wild-type)
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Created: 3rd Jun 2010 at 10:41
Last updated: 8th Nov 2017 at 14:20
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Projects: TRANSLUCENT
Institutions: Humboldt-Universität zu Berlin
I created this for all SysMo Modellers
http://www.semanticsbml.org/aym Annotate Your Model
There you can annotate your non SBML models with biological terms (MIRIAM annotations). As a cool extra you can view you model source code with inserted biological infomation.
Together with this http://www.semanticsbml.org/semanticSBML you can serach for similar BioModels. The similarity search is based on MIRIAM annotations that are attached to you model. AYM also allows you to create annotations without ...
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
Gene interaction networks and models of cation homeostasis in Saccharomyces cerevisiae
Programme: SysMO
Public web page: http://www.translucent-network.org/
Investigation of how the ENA1 gene is transcriptionally regulated.
To model the ENA1 transcriptional regulation a model has to be established. First this will be just a graphical representation, it shall then be extended to a boolean model and shall at one point be converted to a kinetic model.
Submitter: Jaromir Zahrádka
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Saccharomyces cerevisiae
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
