Assays

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188 Assays visible to you, out of a total of 188

RNA Extraction: Validation Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241120-V1_RNAseq-Protocol.docx

Data files: samples-publish_KPRF_SAS_CEL.xlsx, samples-publish_KPRF_SAS_RNA.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:33, Last updated: 5th Feb 2025 at 20:00

Cell Extraction: Validation Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241120-V1_Bacterial-culture-protocol.docx, P.SAS-241120-V1_Cell-culture-protocol.docx

Data files: samples-publish_KPRF_SAS_BAC.xlsx, samples-publish_KPRF_SAS_CEL.xlsx, samples-publish_KPRF_SAS_MUS.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:30, Last updated: 5th Feb 2025 at 19:47

Gene Expression Analysis: Training Data - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_A.GEX.xlsx, samples-publish_KPRF_D.SEQ.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:30, Last updated: 5th Feb 2025 at 19:29

Short Read Sequencing: Training Data - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_D.SEQ.xlsx, samples-publish_KPRF_DNA.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:29, Last updated: 5th Feb 2025 at 19:26

Library Prep: Training Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_DNA.xlsx, samples-publish_KPRF_RNA.xlsx, samples-publish_KPRF_TIS.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:28, Last updated: 5th Feb 2025 at 19:23

Tissue Collection: Training Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_KPRF_BAC.xlsx, samples-publish_KPRF_MUS.xlsx, samples-publish_KPRF_PAT.xlsx, samples-publish_KPRF_PAV.xlsx, samples-publish_KPRF_TIS.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 17:09, Last updated: 5th Feb 2025 at 19:06

Digitally Barcoded Mtb Matrix Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: No SOPs

Data files: A.DBMM-ASIVBCG.xlsx, samples-publishAS-BCG_A.DBMM, samples-publishAS-BCG_D.SEQ

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:37, Last updated: 3rd Feb 2025 at 22:38

PET-CT Scan - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: samples-publishAS-BCG_D.IMG.xlsx, samples-publishAS-BCG_PAV.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:20, Last updated: 3rd Feb 2025 at 22:14

Histology - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Comparable Non-canonical T cell responses are a...

Organisms: No organisms

SOPs: P.SAS-250124-V1_Histology-Protocol.docx

Data files: samples-publishMP_RSTR-D.IMG.xlsx, samples-publishMP_RSTR-TIS.xlsx

Snapshots: No snapshots

Created: 23rd Jan 2025 at 21:13, Last updated: 24th Jan 2025 at 20:55

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: No SOPs

Data files: JP_IVBCG_AllMetadata.xlsx

Snapshots: No snapshots

Created: 4th Dec 2024 at 20:39, Last updated: 5th Dec 2024 at 16:15

Model Validation

Hi-IMPAcTB

Training data for this Model is available: https://fairdomhub.org/studies/1198

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.LAU-240111-V1_SW_LMM_ReadMe.docx

Data files: samples-publishSW_A.FLOW.xlsx, samples-publishSW_A.TITR.xlsx, samples-publishSW_MDL.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:45, Last updated: 9th Oct 2024 at 19:32

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: No SOPs

Data files: RITUX SW - All Metadata.xlsx

Snapshots: No snapshots

Created: 17th Sep 2024 at 20:29, Last updated: 18th Sep 2024 at 14:53

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: No SOPs

Data files: CD4_AllMetadata.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 20:32, Last updated: 16th Jul 2024 at 20:49

PET-CT Scan - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: P.FLY-230523-V1_PET_CT_Imaging

Data files: samples-publishJB_CD4_D.IMG.xlsx, samples-publishJB_CD4_PAV.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:19, Last updated: 16th Jul 2024 at 20:49

Digitally Barcoded Mtb Matrix Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD4+ T cells re-wire granuloma cellularity and ...

Organisms: No organisms

SOPs: No SOPs

Data files: aCD4_cleaned_data_stats_circos, samples-publishJB_CD4_A.DBMM.xlsx, samples-publishJB_CD4_D.SEQ.xlsx

Snapshots: No snapshots

Created: 16th Jul 2024 at 17:09, Last updated: 16th Jul 2024 at 20:30

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies promote neutrophil-dep...

Organisms: No organisms

SOPs: No SOPs

Data files: Fc-Engineered - All Metadata

Snapshots: No snapshots

Created: 5th Jun 2024 at 18:52, Last updated: 6th Jun 2024 at 19:12

Tissue Extraction - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies promote neutrophil-dep...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-BSRA-Protocol-Ir...

Data files: samples-publish2024-06-04-AB.xlsx, samples-publish2024-06-04-BAC.xlsx, samples-publish2024-06-04-D.BSRA.xlsx, samples-publish2024-06-04-PAV.xlsx, samples-publish2024-06-04-TIS.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 18:51, Last updated: 6th Jun 2024 at 18:19

Antibody Challenge - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies promote neutrophil-dep...

Organisms: No organisms

SOPs: P.ALT-240307-V1_Engler---Golden-Gate-Cloning.pdf

Data files: samples-publish2024-06-04-AB.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:21, Last updated: 5th Jun 2024 at 19:42

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Specific CD4+ T cell phenotypes associate with ...

Organisms: No organisms

SOPs: No SOPs

Data files: RSTR_All_Metadata

Snapshots: No snapshots

Created: 3rd Jun 2024 at 21:09, Last updated: 4th Jun 2024 at 15:37

Titer Assay Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Humoral correlates of protection against Mycoba...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2023-12-23-A.TITR.xlsx, samples-publish2023-12-23-D.TITR.xlsx

Snapshots: No snapshots

Created: 19th Dec 2023 at 20:22, Last updated: 9th Jan 2024 at 20:17

FC Receptor Binding - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Humoral correlates of protection against Mycoba...

Organisms: No organisms

SOPs: P.ALT-230627-V1_FCRB-EI_IVBCG.docx

Data files: samples-publish2023-12-23-D.FCRB.xlsx, samples-publish2023-12-23-TIS.xlsx

Snapshots: No snapshots

Created: 19th Dec 2023 at 20:08, Last updated: 9th Jan 2024 at 19:56

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: No SOPs

Data files: All Metadata - CD8 Depletion.xlsx

Snapshots: No snapshots

Created: 13th Oct 2023 at 20:11, Last updated: 24th Oct 2023 at 16:40

Digitally Barcoded Mtb Matrix Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FOR-231020-V1_DBMM-Analysis-CD8.docx

Data files: A.DBMM-samples-publish2023-10-11_16-10.xlsx, CD8 Depletion Digitally Barcoded MTB Matrix.xlsx, DSEQ-BAC-samples-publish2023-10-11_15-51.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 17:48, Last updated: 20th Oct 2023 at 19:27

Flow Cytometry Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: No SOPs

Data files: A.FLOW-samples-publish2023-10-11_16-45.xlsx, CD8 counts AFLOW, CD8 cytokine AFLOW, D.FLOW-samples-publish2023-10-11_16-20.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:51, Last updated: 20th Oct 2023 at 14:51

Flow Cytometry Processing – Data Attached

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Immune cells in bronchoalveolar lavage fluid of...

Organisms: No organisms

SOPs: No SOPs

Data files: A.FLOW-flowcytometry_10.1371.journal.pone.02494..., A.FLOW-samples-publish2023-03-31_14-52.xlsx, D.FLOW-samples-publish2023-05-19_15-39.xlsx

Snapshots: No snapshots

Created: 18th Oct 2021 at 18:47, Last updated: 19th May 2023 at 20:41

Immunohistochemistry – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220824-V1_P---Immunohistochemistry-Analys...

Data files: AB-samples-publish2022-10-28_14-18.xlsx, ABP-samples-publish2022-10-28_14-25.xlsx, D.IMG-samples-publish2022-10-28_14-40.xlsx, samples-publish2023-03-21_22-232.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:08, Last updated: 22nd Mar 2023 at 03:40

PET-CT Scan – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: D.IMG-samples-publish2022-10-28_13-10.xlsx, PAV-samples-publish2022-11-3_15-09.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:09, Last updated: 3rd Nov 2022 at 16:10

NHP Necropsy – Metadata

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---Bacteria-Burden.docx, P.FLY-220823-V1_P---Chromosomal-Equivalents.rtf, P.FLY-220823-V1_P---Necropsy.docx

Data files: PAV-samples-publish2022-11-3_15-09.xlsx, TIS-samples-publish2022-10-11_23-37.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:03, Last updated: 3rd Nov 2022 at 16:02

PET-CT Scan Analysis – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: A.CTSC-samples-publish2022-10-28_13-14.xlsx, D.IMG-samples-publish2022-10-28_13-10.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:12, Last updated: 28th Oct 2022 at 13:23

Single Cell Clustering Analysis – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.SHA-220824-V1_P---Clustering.docx

Data files: A.SCCL-samples-publish2022-10-28_13-03.xlsx, A.SCXP-samples-publish2022-10-25_21-23.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:07, Last updated: 28th Oct 2022 at 13:09

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