The RNA Systems Biology Lab Programme compiles the different research projects developed in our lab. The RNA Systems Biology Lab is a collaborative research lab headed by PIs Margarida Gama-Carvalho and Francisco Pinto at the Department of Chemistry and Biochemistry, Faculty of Sciences, University of Lisbon, and integrates the BioSystems and Integrative Sciences Institute (BioISI) Gene Expression and Regulation Group, headed by Margarida Gama-Carvalho. Our research brings together computational and laboratory approaches to characterize and model regulatory networks involved in the coordination of gene expression programs in vertebrates. We are particularly interested in regulatory events occurring at the post-transcriptional level involving small non-coding RNAs and the interaction of RNA binding proteins with mRNA untranslated sequence elements (UTRs). Our expanded interests further include the development of integrative data analysis and next generation sequencing technologies - in particular RNA-seq and nanopore seq - for biomedical applications including biomarker identification, genetic profiling and precision medicine.
Web page: Not specified
Funding details:Related items
- People (6)
- Projects (6)
- Institutions (1)
- Investigations (0+15)
- Studies (0+14)
- Assays (0+5)
- Data files (0+3)
- SOPs (0+2)
- Publications (5)
- Events (0+4)
- Documents (0+1)
Projects: CF transcriptome, miRiAD - exploring the role of microRNAs in T cell function and anti-viral defence, ComPASs - Common Pathways in Amyotrophic Lateral Sclerosis (ALS) and Spinal Muscular Atrophy (SMA), LungCARD - Blood test for clinical therapy guidance of non-small cell lung cancer patients, UnCentre - Unlocking satellite DNA and centromere structure in vertebrate chromosomes, PhotoBoost
Institutions: RNA Systems Biology Lab - BioISI/FCUL, Instituto de Tecnologia Química e Biológia - Universidade Nova de Lisboa
Group Leader and Assistant Professor
Projects: ComPASs - Common Pathways in Amyotrophic Lateral Sclerosis (ALS) and Spinal Muscular Atrophy (SMA), miRiAD - exploring the role of microRNAs in T cell function and anti-viral defence, LungCARD - Blood test for clinical therapy guidance of non-small cell lung cancer patients
Institutions: RNA Systems Biology Lab - BioISI/FCUL
Expertise: Bioinformatics, Systems Biology
Projects: ComPASs - Common Pathways in Amyotrophic Lateral Sclerosis (ALS) and Spinal Muscular Atrophy (SMA), miRiAD - exploring the role of microRNAs in T cell function and anti-viral defence, LungCARD - Blood test for clinical therapy guidance of non-small cell lung cancer patients, Mapping Disease Modules Overlaps in Biological Networks
Institutions: RNA Systems Biology Lab - BioISI/FCUL
https://orcid.org/0000-0002-4217-0054Projects: CF transcriptome
Institutions: RNA Systems Biology Lab - BioISI/FCUL
This project aims to characterise the mechanisms through which microRNAs and small non-coding RNAs act to regulate cellular processes focusing on Naïve CD4 T cell activation and viral replication - namely HIV - and to explore their potential use as a therapeutic co-adjuvant agents or targets.
Organisms: Homo sapiens
Programme: RNA Systems Biology Lab
Public web page: http://flysmals.campus.ciencias.ulisboa.pt
Organisms: Homo sapiens, Drosophila melanogaster
Understanding the molecular basis of diseases can shed light into new methods to manage and cure diseases. Exploring the common or unique molecular mechanisms among a group of diseases may enhance our understanding of each disease or uncover therapeutic approaches that can be effective in multiple diseases. In this project we develop methods that use biological networks and known gene-disease associations to identify common molecular mechanisms associated across multiple diseases.
Organisms: Not specified
Organisms: Homo sapiens
Programme: RNA Systems Biology Lab
Public web page: Not specified
Organisms: Homo sapiens, Peromyscus maniculatus
Programme: RNA Systems Biology Lab
Public web page: Not specified
Organisms: Homo sapiens
Abstract (Expand)
Authors: Meredith Hill, Dayna Mason, Tânia Monteiro Marques, Margarida Gama Carvalho, Nham Tran
Date Published: 1st Oct 2019
Publication Type: Not specified
DOI: 10.1016/j.mex.2019.10.011
Citation: MethodsX
Abstract (Expand)
Authors: Marina L. Garcia-Vaquero, Margarida Gama-Carvalho, Javier De Las Rivas, Francisco R. Pinto
Date Published: 1st Dec 2018
Publication Type: Not specified
DOI: 10.1038/s41598-018-29990-7
Citation: Sci Rep 8(1) : 275
Abstract (Expand)
Authors: D. Mason, X. Zhang, T. M. Marques, B. Rose, S. Khoury, M. Hill, F. Deutsch, J. G. Lyons, M. Gama-Carvalho, N. Tran
Date Published: 24th Jun 2018
Publication Type: Not specified
PubMed ID: 29935424
Citation: Virology. 2018 Aug;521:149-157. doi: 10.1016/j.virol.2018.05.022. Epub 2018 Jun 20.
Abstract (Expand)
Authors: A. J. Amaral, J. Andrade, R. B. Foxall, P. Matoso, A. M. Matos, R. S. Soares, C. Rocha, C. G. Ramos, R. Tendeiro, A. Serra-Caetano, J. A. Guerra-Assuncao, M. Santa-Marta, J. Goncalves, M. Gama-Carvalho, A. E. Sousa
Date Published: 1st Feb 2017
Publication Type: Not specified
PubMed ID: 27993935
Citation: EMBO J. 2017 Feb 1;36(3):346-360. doi: 10.15252/embj.201694335. Epub 2016 Dec 19.
Abstract (Expand)
Authors: M. Gama-Carvalho, M. L Garcia-Vaquero, F. R Pinto, F. Besse, J. Weis, A. Voigt, J. B. Schulz, J. De Las Rivas
Date Published: 6th Jan 2017
Publication Type: Not specified
PubMed ID: 28054357
Citation: J Neurochem. 2017 Apr;141(1):12-30. doi: 10.1111/jnc.13945. Epub 2017 Feb 28.