Assays

What is an Assay?

235 Assays visible to you, out of a total of 237

Mutational Spectral Analysis - Data Attached

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Molecular origins of mutational spectra produce...

Organisms: No organisms

SOPs: P.ESS-230303-V1_Data-processing-(alignment).docx

Data files: A.MUSP-samples-publish2023-03-08_17-46.xlsx, Armijo-NDMA_HRMS-data.xlsx

Snapshots: No snapshots

Created: 8th Mar 2023 at 18:43, Last updated: 8th Mar 2023 at 22:52

Necropsy - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Molecular origins of mutational spectra produce...

Organisms: No organisms

SOPs: No SOPs

Data files: MUS-samples-publish2023-03-08_12-23.xlsx, PAV-samples-publish2023-03-08_12-32.xlsx, TIS-samples-publish2023-03-08_12-40.xlsx

Snapshots: No snapshots

Created: 7th Mar 2023 at 20:17, Last updated: 8th Mar 2023 at 22:52

PET-CT Scan – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: D.IMG-samples-publish2022-10-28_13-10.xlsx, PAV-samples-publish2022-11-3_15-09.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:09, Last updated: 3rd Nov 2022 at 16:10

NHP Necropsy – Metadata

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---Bacteria-Burden.docx, P.FLY-220823-V1_P---Chromosomal-Equivalents.rtf, P.FLY-220823-V1_P---Necropsy.docx

Data files: PAV-samples-publish2022-11-3_15-09.xlsx, TIS-samples-publish2022-10-11_23-37.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:03, Last updated: 3rd Nov 2022 at 16:02

Patient Visit – Metadata

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---Mtb-Infection.rtf, P.FLY-220823-V1_P---NHP_housing.docx, P.FLY-220823-V1_P---Necropsy.docx, P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: NHP-samples-publish2022-09-28_17-30.xlsx, PAV-samples-publish2022-11-3_15-09.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:01, Last updated: 3rd Nov 2022 at 16:00

PET-CT Scan Analysis – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: A.CTSC-samples-publish2022-10-28_13-14.xlsx, D.IMG-samples-publish2022-10-28_13-10.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:12, Last updated: 28th Oct 2022 at 13:23

Single Cell Clustering Analysis – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.SHA-220824-V1_P---Clustering.docx

Data files: A.SCCL-samples-publish2022-10-28_13-03.xlsx, A.SCXP-samples-publish2022-10-25_21-23.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:07, Last updated: 28th Oct 2022 at 13:09

Single Cell Expression Matrix Analysis – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Data files: A.SCXP-samples-publish2022-10-25_21-23.xlsx, D.SEQ-samples-publish2022-10-25_19-32.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:07, Last updated: 25th Oct 2022 at 17:15

Single Cell Sequencing – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: D.SEQ-samples-publish2022-10-25_19-32.xlsx, DNA-samples-publish2022-10-18_00-56.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:06, Last updated: 25th Oct 2022 at 15:32

Library Creation – Metadata

Hi-IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as..., P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: DNA-samples-publish2022-10-18_00-56.xlsx, TIS-samples-publish2022-10-11_23-37.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 19:04, Last updated: 25th Oct 2022 at 14:28

Functional Assay – Metadata

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211020-V1_LAM-ADCP-Protocol-EI.doc, P.ALT-211020-V1_LAM-ADNP-Protocol-EI.doc, P.ALT-211101-V1_LAM-ADNKA-Protocol-EI.doc

Data files: No Data files

Snapshots: No snapshots

Created: 27th Jan 2022 at 21:07, Last updated: 21st Apr 2022 at 18:18

Anti-Microbial Assay – Metadata

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211119-V1_Mac-Live-Dead-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Opsonize-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Protocol-EI.docx

Data files: No Data files

Snapshots: No snapshots

Created: 27th Jan 2022 at 20:59, Last updated: 21st Apr 2022 at 18:18

Luminex Data Processing – Data Attached

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-220127-V1_EI-IV_BCG_PLS-DA_Statistics.docx

Data files: A.LMX-samples-publish2022-01-27_23-59.xlsx, D.FILE-220127ALT-1_Data_EI_IV_BCG_IgM_SystemsSe..., D.FILE-samples-publish2022-01-28_00-04.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 15:54, Last updated: 21st Apr 2022 at 18:17

Luminex Assay – Metadata

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211020-V1_NHP-FcR-Luminex-Protocol-EI.doc, P.ALT-211020-V1_NHP-Isotype-Luminex-Protocol-EI..., P.ALT-211203-V1_BCG_study_EI_luminex_panel.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 15:54, Last updated: 21st Apr 2022 at 18:16

NHP Tissue Collection – Metadata

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: No SOPs

Data files: CEX-samples-publish2022-01-28_00-10.xlsx, NHP-samples-publish2022-01-28_00-20.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 15:52, Last updated: 21st Apr 2022 at 18:16

Single Cell Sequencing – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-FcγR interactions shift alveolar macrophage ...

Organisms: No organisms

SOPs: No SOPs

Data files: D.SEQ-samples-publish2022-03-25_04-01.xlsx

Snapshots: No snapshots

Created: 24th Mar 2022 at 19:56, Last updated: 21st Apr 2022 at 17:50

Single Cell Sequencing Analysis – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-FcγR interactions shift alveolar macrophage ...

Organisms: No organisms

SOPs: No SOPs

Data files: A.SCCLUST-samples-publish2022-04-08_05-10.xlsx, A.SCEXPR-samples-publish2022-04-08_05-07.xlsx

Snapshots: No snapshots

Created: 7th Apr 2022 at 21:03, Last updated: 21st Apr 2022 at 17:48

Tissue Extraction – Metadata

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-FcγR interactions shift alveolar macrophage ...

Organisms: No organisms

SOPs: No SOPs

Data files: MUS-samples-publish2022-03-15_01-19.xlsx, TIS-samples-publish2022-03-15_01-23.xlsx

Snapshots: No snapshots

Created: 14th Mar 2022 at 17:10, Last updated: 21st Apr 2022 at 17:47

RaDR Image Machine Learning Analysis – Data Attached

MIT SRP

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Excision of mutagenic replication-blocking lesi...

Organisms: No organisms

SOPs: No SOPs

Data files: A.IMG-samples-publish2021-12-13_22-22.xlsx, WAD_RaDR_roi_extraction_10.1016.j.celrep.2021.1..., samples-publish2021-03-30_16-04.xlsx

Snapshots: No snapshots

Created: 13th Dec 2021 at 14:19, Last updated: 10th Jan 2022 at 17:04

GPT Assay – Data Attached

MIT SRP

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Excision of mutagenic replication-blocking lesi...

Organisms: No organisms

SOPs: P.ESS-201123-V1_gpt-NextGen-Protocol.pdf

Data files: 10.1016.j.celrep.2021.108864_GPT_assay, D.GPT-samples-publish2021-12-13_23-22.xlsx

Snapshots: No snapshots

Created: 20th Sep 2021 at 13:55, Last updated: 10th Jan 2022 at 16:58

Tissue Imaging – Metadata

MIT SRP

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Excision of mutagenic replication-blocking lesi...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2021-03-30_16-04.xlsx

Snapshots: No snapshots

Created: 29th Mar 2021 at 17:57, Last updated: 10th Jan 2022 at 16:49

Mouse Necropsy – Metadata

MIT SRP

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Excision of mutagenic replication-blocking lesi...

Organisms: No organisms

SOPs: P.ENG-200806-V2_Short-Term-Collection-at-Necrop..., P.ENG-201008-V1_Med-Term-Collection-at-Necropsy...

Data files: samples-publish2021-03-30_16-25.xlsx, samples-publish2021-03-30_17-38.xlsx, samples-publish2021-09-20_22-36.xlsx

Snapshots: No snapshots

Created: 29th Mar 2021 at 16:35, Last updated: 10th Jan 2022 at 16:47

Tissue Lysis – Metadata

MIT SRP

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Excision of mutagenic replication-blocking lesi...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2021-03-30_17-07.xlsx

Snapshots: No snapshots

Created: 30th Mar 2021 at 16:57, Last updated: 10th Jan 2022 at 16:41

Mass Spectrometry – Data Linked

MIT SRP

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Excision of mutagenic replication-blocking lesi...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2021-03-30_15-51.xlsx, samples-publish2021-03-30_17-07.xlsx

Snapshots: No snapshots

Created: 29th Mar 2021 at 18:00, Last updated: 10th Jan 2022 at 16:38

Mass Spectrometry Processing – Data Linked

MIT SRP

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Excision of mutagenic replication-blocking lesi...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2021-03-30_14-31.xlsx, samples-publish2021-03-30_15-51.xlsx

Snapshots: No snapshots

Created: 29th Mar 2021 at 18:00, Last updated: 10th Jan 2022 at 16:37

Assays

Filters ×

Filters