Assays

What is an Assay?

298 Assays visible to you, out of a total of 298

Genome Alignment - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Molecular origins of mutational spectra produce...

Organisms: No organisms

SOPs: P.ESS-230303-V1_Data-processing-(alignment).docx

Data files: A.ALN-samples-publish2023-03-24_14-05.xlsx, D.SEQ-samples-publish2023-03-24_13-17.xlsx

Snapshots: No snapshots

Created: 7th Mar 2023 at 20:25, Last updated: 14th Apr 2025 at 18:27

Patient Visit – Metadata

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Immune cells in bronchoalveolar lavage fluid of...

Organisms: No organisms

SOPs: P.BOO-230324-V1_2016_Nov_04_Bronchoscopy_Protoc..., P.BOO-230324-V1_2018_June_Bronchoscopy_Protocol..., P.BOO-230324-V1_2019_April_Bronchoscopy_Protoco..., P.BOO-230324-V1_2020_Jan_Bronchoscopy_Protocol_..., P.BOO-230324-V1_KC_Protocol

Data files: PAT-samples-publish2023-03-27_16-07.xlsx, PAV-samples-publish2023-03-27_16-19.xlsx

Snapshots: Snapshot 1

Created: 18th Oct 2021 at 14:23, Last updated: 14th Apr 2025 at 18:26

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Immune cells in bronchoalveolar lavage fluid of...

Organisms: No organisms

Data files: PAV-samples-publish2023-03-27_16-19.xlsx, TIS-samples-publish2023-03-27_16-27.xlsx

Snapshots: No snapshots

Created: 27th Mar 2023 at 21:03, Last updated: 14th Apr 2025 at 18:26

Flow Cytometry Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Impact of fibrinogen, fibrin thrombi and thromb...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Flow.docx

Data files: A.FLOW-samples-publish2023-05-16_12-02.xlsx, D.FLOW-samples-publish2023-05-16_11-54.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 21:01, Last updated: 14th Apr 2025 at 18:24

Flow Cytometry - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Impact of fibrinogen, fibrin thrombi and thromb...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Flow.docx

Data files: AB-samples-publish2023-05-16_12-07.xlsx, ABP-samples-publish2023-05-16_12-11.xlsx, CEL-samples-publish2023-05-16_11-33.xlsx, D.FLOW-samples-publish2023-05-16_11-54.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 21:00, Last updated: 14th Apr 2025 at 18:23

Device Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Impact of fibrinogen, fibrin thrombi and thromb...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Confocal-imaging.docx

Data files: D.IMG-samples-publish2023-05-16_11-46.xlsx, OOC-samples-publish2023-05-16_11-38.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 20:58, Last updated: 14th Apr 2025 at 18:22

Microfluidic Device Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Impact of fibrinogen, fibrin thrombi and thromb...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Cell-culture.docx, P.KAM-230131-V1_OOC-protocol-device-and-network...

Data files: CEL-samples-publish2023-05-16_11-33.xlsx, OOC-samples-publish2023-05-16_11-38.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 20:57, Last updated: 14th Apr 2025 at 18:21

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as..., P.FLY-231011_Patient Visit CD8

Data files: PAV-2-samples-publish2023-10-11_13-11.xlsx, TIS-samples-publish2023-10-11_14-11.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:45, Last updated: 14th Apr 2025 at 18:15

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---NHP_housing.docx, P.FLY-231011_Patient Visit CD8

Data files: AB-samples-publish2023-10-11_13-30.xlsx, BAC-samples-publish2023-10-11_13-48.xlsx, NHP-samples-publish2023-10-11_12-59.xlsx, PAV-2-samples-publish2023-10-11_13-11.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:43, Last updated: 14th Apr 2025 at 18:14

Comet Chip - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_Cell-Culture.docx, P.ENG-230912-V1_In-Vivo-Comet-Assay-Protocol.docx

Data files: CEL-samples-publish2023-09-19_13-11.xlsx, D.IMG-samples-publish2023-09-13_12-43.xlsx, TIS-samples-publish2023-09-13_12-27.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:15, Last updated: 14th Apr 2025 at 18:11

Comet Chip Analysis - Data Attached

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_In-Vivo-Comet-Assay-Protocol.docx

Data files: Figure 2B MMS 211203.pzfx, Figure 3A hAAG 211201_Enzymes.pzfx, Figure 3B MMS FPG.pzfx, Figure 4B.pzfx, Figure 5A Liver Time Course.pzfx, Figure 5B Lung time course.pzfx, Figure 5C Kidney NDMA Time Course.pzfx, Figure 6A Liver hAAG.pzfx, Figure 6B Liver Fpg.pzfx, Figure 6C-D Lung with Enzymes.pzfx, Figure 6E-F In_vivo_NDMA_Kidney w Enzymes copy...., Figure S2 MEFs and HepG2.pzfx, Figure S5A In_vivo_NDMA_Pancreas.pzfx, Figure S5B NDMA Spleen.pzfx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:15, Last updated: 14th Apr 2025 at 18:09

Tissue Collection - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_MMS-and-NDMA-TIS.docx, P.ENG-230913-V1_In-Vivo-Comet-Chip---MUS.docx

Data files: MUS-samples-publish2023-09-13_11-48.xlsx, TIS-samples-publish2023-09-13_12-27.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:14, Last updated: 14th Apr 2025 at 18:06

Chemical Challenge - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230913-V1_Chemicals-and-Reagents.docx, P.ENG-230913-V1_In-Vivo-Comet-Chip---MUS.docx

Data files: CHM-samples-publish2023-09-13_11-34.xlsx, MUS-samples-publish2023-09-13_11-48.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:13, Last updated: 14th Apr 2025 at 18:05

Mass Cytometry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: 1 hidden item

Organisms: No organisms

SOPs: 1 hidden item

Data files: 4 hidden items

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:51, Last updated: 28th Mar 2025 at 21:51

Mass Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: 1 hidden item

Organisms: No organisms

SOPs: 1 hidden item

Data files: 2 hidden items

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:52, Last updated: 28th Mar 2025 at 21:51

Flow Cytometry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: 1 hidden item

Organisms: No organisms

SOPs: 1 hidden item

Data files: 5 hidden items

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:48, Last updated: 28th Mar 2025 at 21:46

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: 1 hidden item

Organisms: No organisms

SOPs: 1 hidden item

Data files: 2 hidden items

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:49, Last updated: 28th Mar 2025 at 21:41

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: 1 hidden item

Organisms: No organisms

SOPs: No SOPs

Data files: 2 hidden items

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:42, Last updated: 28th Mar 2025 at 18:55

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: 1 hidden item

Organisms: No organisms

SOPs: 1 hidden item

Data files: 1 hidden item

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:45, Last updated: 28th Mar 2025 at 18:55

Library Creation - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: 1 hidden item

Organisms: No organisms

SOPs: No SOPs

Data files: 2 hidden items

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:40, Last updated: 28th Mar 2025 at 18:54

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: 1 hidden item

Organisms: No organisms

SOPs: 1 hidden item

Data files: 2 hidden items

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:37, Last updated: 28th Mar 2025 at 18:51

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: 1 hidden item

Organisms: No organisms

SOPs: 2 hidden items

Data files: 2 hidden items

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:35, Last updated: 28th Mar 2025 at 18:47

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: 1 hidden item

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:54

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systematic deconstruction of myeloid cell signa...

Organisms: No organisms

SOPs: No SOPs

Data files: Systematic Granuloma - All Metadata_v1.xlsx

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:10, Last updated: 28th Mar 2025 at 17:26

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systematic deconstruction of myeloid cell signa...

Organisms: No organisms

SOPs: P.BRY-250325-V1_systematic_SEQ_analysis.docx

Data files: samples-publish_250326_A.SCXP.xlsx, samples-publish_250326_D.SEQ.xlsx

Snapshots: No snapshots

Created: 25th Mar 2025 at 20:39, Last updated: 28th Mar 2025 at 17:24

Gene Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systematic deconstruction of myeloid cell signa...

Organisms: No organisms

SOPs: P.BRY-250325-V1_systematic_SEQ_analysis.docx

Data files: samples-publish_250326_A.GEX.xlsx, samples-publish_250326_D.SEQ.xlsx

Snapshots: No snapshots

Created: 25th Mar 2025 at 20:40, Last updated: 28th Mar 2025 at 17:18

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systematic deconstruction of myeloid cell signa...

Organisms: No organisms

SOPs: P.BRY-241219-V1_HMDM-Protocol.docx, P.BRY-250327-V1_scRNAseq.docx

Data files: samples-publish_250326_D.SEQ.xlsx, samples-publish_250326_DNA.xlsx

Snapshots: No snapshots

Created: 25th Mar 2025 at 20:38, Last updated: 28th Mar 2025 at 17:10

Immunohistochemistry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systematic deconstruction of myeloid cell signa...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:08

Library Creation - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systematic deconstruction of myeloid cell signa...

Organisms: No organisms

SOPs: P.BRY-241219-V1_HMDM-Protocol.docx, P.BRY-250327-V1_scRNAseq.docx

Data files: samples-publish_250326_CEL.xlsx, samples-publish_250326_DNA.xlsx, samples-publish_250326_TIS.xlsx

Snapshots: No snapshots

Created: 25th Mar 2025 at 20:37, Last updated: 28th Mar 2025 at 17:06

Cell Isolation - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systematic deconstruction of myeloid cell signa...

Organisms: No organisms

SOPs: P.BRY-241219-V1_HMDM-Protocol.docx

Data files: samples-publish_250326_CEL.xlsx, samples-publish_250326_TIS.xlsx

Snapshots: No snapshots

Created: 25th Mar 2025 at 20:35, Last updated: 28th Mar 2025 at 17:00

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