Assays

What is an Assay?

157 Assays visible to you, out of a total of 179

Device Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-240129-V1_Device-iVas.docx, P.KAM-240129-V1_Imaging-Analysis-iVas.docx, P.KAM-240129-V1_Immunofluorescene-iVas.docx, P.KAM-240129-V1_Migration-Assays-iVas.docx

Data files: samples-publish2024-02-09-D.IMG.xlsx, samples-publish2024-02-09-OOC.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:56, Last updated: 18th Dec 2024 at 18:26

Migration Assay Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-240129-V1_Imaging-Analysis-iVas.docx, P.KAM-240129-V1_Migration-Assays-iVas.docx

Data files: samples-publish2024-02-09-A.MIGR.xlsx, samples-publish2024-02-09-D.IMG.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:56, Last updated: 18th Dec 2024 at 18:26

All Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: No SOPs

Data files: iVas - All Metadata

Snapshots: No snapshots

Created: 9th Feb 2024 at 19:10, Last updated: 18th Dec 2024 at 16:47

Flow Cytometry - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-240129-V1_Flow-Cytometry-iVas.docx

Data files: samples-publish2024-02-09-AB.xlsx, samples-publish2024-02-09-ABP.xlsx, samples-publish2024-02-09-CEL.xlsx, samples-publish2024-02-09-D.FLOW.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:57, Last updated: 18th Dec 2024 at 16:47

Flow Cytometry Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2024-02-09-A.FLOW.xlsx, samples-publish2024-02-09-D.FLOW.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:58, Last updated: 18th Dec 2024 at 16:47

Cell Culture and Tumor Spheroid Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Cell-culture.docx, P.KAM-240129-V1_Cell-Culture-and-Tumor-Spheroid..., P.KAM-240129-V1_Monocyte-Isolation-iVas.docx

Data files: samples-publish2024-02-09-CEL.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:54, Last updated: 18th Dec 2024 at 16:47

Microfluidic Device Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-240129-V1_Device-iVas.docx

Data files: samples-publish2024-02-09-CEL.xlsx, samples-publish2024-02-09-OOC.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:55, Last updated: 18th Dec 2024 at 16:47

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: No SOPs

Data files: JP_IVBCG_AllMetadata.xlsx

Snapshots: No snapshots

Created: 4th Dec 2024 at 20:39, Last updated: 5th Dec 2024 at 16:15

Library Creation - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: samples-publishJP_IVCBG_DNA.xlsx, samples-publishJP_IVCBG_TIS.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:23, Last updated: 5th Dec 2024 at 16:15

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: P.BRY-241204-V1_StudyDesign_JP_IVBCG.docx

Data files: samples-publishJP_IVCBG_PAV.xlsx, samples-publishJP_IVCBG_TIS.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:22, Last updated: 5th Dec 2024 at 16:15

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: samples-publishJP_IVCBG_D.SEQ.xlsx, samples-publishJP_IVCBG_DNA.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:24, Last updated: 4th Dec 2024 at 21:13

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Data files: samples-publishJP_IVCBG_A.SCXP.xlsx, samples-publishJP_IVCBG_D.SEQ.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:25, Last updated: 4th Dec 2024 at 21:13

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Protective intravenous BCG vaccination induces ...

Organisms: No organisms

SOPs: P.BRY-241204-V1_StudyDesign_JP_IVBCG.docx

Data files: samples-publishJP_IVCBG_BAC.xlsx, samples-publishJP_IVCBG_NHP.xlsx, samples-publishJP_IVCBG_PAV.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:20, Last updated: 4th Dec 2024 at 21:13

Device Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Utilizing convolutional neural networks for dis...

Organisms: No organisms

SOPs: P.KAM-240227-V1_Image-Aquisiton-CNN.docx;

Data files: samples-publish2024-03-05-D.IMG.xlsx, samples-publish2024-03-05-OOC.xlsx and 1 hidden item

Snapshots: No snapshots

Created: 5th Mar 2024 at 18:50, Last updated: 23rd Oct 2024 at 19:28

Model Validation

Hi-IMPAcTB

Training data for this Model is available: https://fairdomhub.org/studies/1198

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.LAU-240111-V1_SW_LMM_ReadMe.docx

Data files: samples-publishSW_A.FLOW.xlsx, samples-publishSW_A.TITR.xlsx, samples-publishSW_MDL.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:45, Last updated: 9th Oct 2024 at 19:32

UV-Vis Spectroscopy Analysis - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Colorimetric Detection of Aqueous N-Nitrosodime...

Organisms: No organisms

SOPs: P.SWA-240522-V1_CW-NaphthosulfonateIndicator.docx

Data files: samples-publish2024-05-22-A.SPC.xlsx, samples-publish2024-05-22-D.SPC.xlsx

Snapshots: No snapshots

Created: 16th May 2024 at 14:33, Last updated: 18th Sep 2024 at 18:21

Comet Chip - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_Cell-Culture.docx, P.ENG-230912-V1_In-Vivo-Comet-Assay-Protocol.docx

Data files: CEL-samples-publish2023-09-19_13-11.xlsx, D.IMG-samples-publish2023-09-13_12-43.xlsx, TIS-samples-publish2023-09-13_12-27.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:15, Last updated: 18th Sep 2024 at 18:21

Tissue Collection - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_MMS-and-NDMA-TIS.docx, P.ENG-230913-V1_In-Vivo-Comet-Chip---MUS.docx

Data files: MUS-samples-publish2023-09-13_11-48.xlsx, TIS-samples-publish2023-09-13_12-27.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:14, Last updated: 18th Sep 2024 at 18:21

Chemical Challenge - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230913-V1_Chemicals-and-Reagents.docx, P.ENG-230913-V1_In-Vivo-Comet-Chip---MUS.docx

Data files: CHM-samples-publish2023-09-13_11-34.xlsx, MUS-samples-publish2023-09-13_11-48.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:13, Last updated: 18th Sep 2024 at 18:21

Comet Chip Analysis - Data Attached

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_In-Vivo-Comet-Assay-Protocol.docx

Data files: Figure 2B MMS 211203.pzfx, Figure 3A hAAG 211201_Enzymes.pzfx, Figure 3B MMS FPG.pzfx, Figure 4B.pzfx, Figure 5A Liver Time Course.pzfx, Figure 5B Lung time course.pzfx, Figure 5C Kidney NDMA Time Course.pzfx, Figure 6A Liver hAAG.pzfx, Figure 6B Liver Fpg.pzfx, Figure 6C-D Lung with Enzymes.pzfx, Figure 6E-F In_vivo_NDMA_Kidney w Enzymes copy...., Figure S2 MEFs and HepG2.pzfx, Figure S5A In_vivo_NDMA_Pancreas.pzfx, Figure S5B NDMA Spleen.pzfx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:15, Last updated: 18th Sep 2024 at 17:17

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: No SOPs

Data files: RITUX SW - All Metadata.xlsx

Snapshots: No snapshots

Created: 17th Sep 2024 at 20:29, Last updated: 18th Sep 2024 at 14:53

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240411-V1_Flynn_RITUX_Flow_Cytometry_Prot...

Data files: samples-publishSW_A.FLOW.xlsx, samples-publishSW_D.FLOW.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:44, Last updated: 18th Sep 2024 at 14:53

Antibody Titer Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.ALT-231222-V1_ivbcg_ritux_ab_methods.docx

Data files: samples-publishSW_A.TITR.xlsx, samples-publishSW_D.TITR.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:43, Last updated: 18th Sep 2024 at 14:53

Antibody Titer - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.ALT-231222-V1_ivbcg_ritux_ab_methods.docx

Data files: samples-publishSW_D.TITR.xlsx, samples-publishSW_TIS.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:42, Last updated: 18th Sep 2024 at 14:53

PET/CT Scan - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-230523-V1_PET_CT_Imaging

Data files: samples-publishSW_D.IMG.xlsx, samples-publishSW_PAV.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:41, Last updated: 18th Sep 2024 at 14:53

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240808-V1_TISs_RITUX.docx

Data files: samples-publishSW_PAV.xlsx, samples-publishSW_TIS.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:40, Last updated: 18th Sep 2024 at 14:53

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240808-V1_NHPs_RITUX.docx

Data files: samples-publishSW_NHP.xlsx, samples-publishSW_PAV.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:39, Last updated: 18th Sep 2024 at 14:53

Fourier Transform Infrared Spectroscopy - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Optical Detection of Interleukin-6 using Liquid...

Organisms: No organisms

SOPs: P.SWA-240105-V1_FTIR-Protocol.txt

Data files: samples-publish2024-02-10-CHM.xlsx, samples-publish2024-02-10-D.SPC.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 19:52, Last updated: 22nd Aug 2024 at 15:22

Pendant Drop Tensiometry - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Optical Detection of Interleukin-6 using Liquid...

Organisms: No organisms

SOPs: P.SWA-240105-V1_Pendant-Drop-Tensiometry-Protoc...

Data files: samples-publish2024-02-10-CHM.xlsx, samples-publish2024-02-10-D.TNSY.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 19:53, Last updated: 22nd Aug 2024 at 15:22

All Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Optical Detection of Interleukin-6 using Liquid...

Organisms: No organisms

SOPs: No SOPs

Data files: MC - All Metadata.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 20:28, Last updated: 22nd Aug 2024 at 15:22

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