Projects

What is a Project?
16 Projects found

What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.

Our aims

To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost

To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...

Programme: SynthSys

Public web page: Not specified

Research programme in the Takato Imaizumi lab, with multiple collaborators. Published in Song et al. Nature Plants 2018; Kinmonth-Schultz et al., in silico Plant 2019.

The workshop focuses on the publication, curation, retrieval, and usage of kinetic data from the reaction kinetics database SABIO-RK and on the use of data in modeling. There will be experience reports from scientists who successfully used experimental data to formulate or verify biological hypotheses with the computer, and you will experience how experimental data can be used with computational models.

ZucAt - Sucrose (from german Zucker) translocation in Arabidopsis thaliana. Sucrose translocation between plant tissues is crucial for growth, development and reproduction of plants. Systemic analysis of this metabolic process and underlying regulatory processes can help to achieve better understanding of carbon distribution within the plant and the formation of phenotypic traits. Sucrose translocation from ‘source’ tissues (e.g. mesophyll) to ‘sink’ tissues (e.g. root) is tightly bound to the ...

Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)

Public web page: Not specified

Andrew Millar's research group, University of Edinburgh

For plants, light is a signal that carries information about the environment, and a source of energy for photosynthesis. PHYTOCAL focuses on the interaction between phytochrome signalling and photosynthesis, and seeks to understand fundamental processes that make carbon (C) and nitrogen (N) resources available for plant growth. These unexplored connections underlie biomass production and plasticity, which contribute significantly to yield variability in the field.

optogenetic control of plant signaling

Programme: Synthetic Biology HHU

Public web page: Not specified

Start date: 24th Jun 2020

Collaboration with Miltos Tsiantis for reconstructing RCO transcriptional regulation

Programme: Synthetic Biology HHU

Public web page: Not specified

Start date: 8th Sep 2019

improvement of PULSE, derivation of tools for ontogenetic control of interesting pathways

Programme: Synthetic Biology HHU

Public web page: Not specified

Start date: 29th Jun 2020

Modulation of light, temperature and time networks using prime editing and mathematical modelling

Programme: Synthetic Biology HHU

Public web page: Not specified

Start date: 3rd Nov 2019

generation of a toggle switch based on a non-cooperative network

Programme: Synthetic Biology HHU

Public web page: Not specified

Start date: 4th Jul 2019

This projects seeks to uncover how phytochrome signalling modulates leaf architecture

Programme: Halliday Lab

Public web page: http://hallidaylab.bio.ed.ac.uk/

Start date: 10th Jan 2017

How light control development

Programme: Modelling Light Control of Development

Public web page: Not specified

Start date: 1st Nov 2017

End date: 30th Nov 2021

Research group of Guillaume Lobet

EPSRC project with Exeter, SynthSys and EPCC

Programme: SynthSys

Public web page: Not specified

EU FP7 collaborative project TiMet, award number 245143. Funded 2010-2015. "TiMet assembles world leaders in experimental and theoretical plant systems biology to advance understanding of the regulatory interactions between the circadian clock and plant metabolism, and their emergent effects on whole-plant growth and productivity."

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