Sample_list
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List of samples used in the assay (extracted from original BioDare metadata and converted to csv)

SEEK ID: https://fairdomhub.org/data_files/8731?version=1

Filename: Sample_list.csv

Format: Comma-separated values document

Size: 94.4 KB

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Creators and Submitter

Creators

Not specified

Additional credit

Benedicte Wenden

Submitter

Daniel Thedie

License

Creative Commons Attribution 4.0 International (CC-BY-4.0)

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Views: 44 Downloads: 2

Created: 18th Jun 2026 at 13:13

Last updated: 18th Jun 2026 at 13:14

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Version 1 (earliest) Created 18th Jun 2026 at 13:14 by Daniel Thedie

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Daniel Thedie

Projects: Millar group, BioDare1

Institutions: University of Edinburgh, School of Biological Sciences, University of Edinburgh

https://orcid.org/0000-0002-1352-7245

Expertise: Data Management, Python, R, Programming, microscopy, fluorescence protein fusions, Software Engineering

Tools: Data Management, Python, R, Fluorescence and confocal microscopy, Time-lapse fluorescence microscopy Flow cytometry, Fluorecence based reporter gene analyses/single cell analyses

Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.

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Centre for Engineering Biology (prev. SynthSys)

The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.

Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1

Web page: https://biology.ed.ac.uk/centre-engineering-biology

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BioDare1

Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).

Programme: Centre for Engineering Biology (prev. SynthSys)

Public web page: Not specified

Organisms: Not specified

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Wenden Benedicte

BioDare1

Collection of experiments created by Wenden Benedicte on the original BioDare and automatically transferred to FAIRDOM Hub.

Created: 18th Jun 2026 at 13:01

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Wenden et al. (2012)

BioDare1

Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf

Wenden et al. (2012)

DOI: 10.1073/pnas.1118814109

Submitter: Daniel Thedie

Investigation: Wenden Benedicte

Assays: BW-detached_LD-LL_#03, BW-detached_LD-LL_#06, BW-detached_LL-LL_#14, BW-detached_LL-LL_#16, BW-detached_LL-LL_#20, BW-intact_LD-LL_#23, BW-intact_LL-LD_#31, BW-intact_LL-LL_#37, BW-intact_LL-LL_#46, BW-intact_LL-LL_#56, BW-intact_LL-LL_#58

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Created: 18th Jun 2026 at 13:01

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BW-intact_LL-LL_#46

BioDare1

BW-intact_LL-LL_#46

Property	Value
BioDare ID	13394446784669
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 46 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.