input/Prioritization/input/PlantImmuneSignalling_NODES_NBA.txt Version 1
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_DiNAR/_A_PIS-SxPv12-DiNAR/
SEEK ID: https://fairdomhub.org/data_files/5402?version=1
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input/Prioritization/input/PlantImmuneSignalling_NODES_NBA.txt
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4CLL g15680 4CLL g41047 4CLL g57849 4CLL g73867 4CLL g86084 AAO g45732 AAO g54547 AAO g54552 AAO g7949 ACH g127112 ACH g46982 ACH g51318 ACH g7226 ACH g75497 ACH g92959 ACH g92961 ACO g102502 ACO g105748 ACO g106211 ACO g118600 ACO g130055 ACO g14102 ACO g2137 ACO g23064 ACO g26129 ACO g42666 ACO g42669 ACO g43684 ACO g6516 ACO g91817 ACO g94763 ACS1,2,6 g100254 ACS1,2,6 g1034 ACS1,2,6 g110 ACS1,2,6 g50338 ACS1,2,6 g59688 ACS1,2,6 g73457 ACS1,2,6 g73461 ACX1,5 g98107 ACX3,6 g19070 ACX3,6 g19072 ACX3,6 g78849 ACX3,6 g78851 ADT g129959 ADT g20604 ADT g23149 ADT g57441 ADT g68272 ADT g74214 ADT g89848 AGO1,5,7,10 g110939 AGO1,5,7,10 g48179 AGO1,5,7,10 g55026 AGO1,5,7,10 g69305 AGO1,5,7,10 g74251 AGO1,5,7,10 g75117 AGO1,5,7,10 g84145 AGO1,5,7,10 g88845 AGO1,5,7,10 g89820 AGO1,5,7,10 g92559 AGO1,5,7,10 g94097 AOC g132548 AOC g24790 AOS g104671 AOS g104673 AOS g20408 AOS g34739 AOS g42636 AOS g52939 AOS g52942 AOS g58481 AOS g58482 AOS g68176 AOS g76520 AOS g76526 APX1,2 g119176 APX1,2 g121142 APX1,2 g27683 APX1,2 g50815 APX1,2 g74581 APX3 g25138 APX3 g58109 APX3 g77585 APX4 g41270 ASK g108976 ASK g116295 ASK g16597 ASK g52782 ASK g58903 ASK g77624 ASK g87550 ATPB g101555 ATPB g111145 ATPB g119667 ATPB g120754 ATPB g120758 ATPB g12778 ATPB g132397 ATPB g132399 ATPB g13742 ATPB g17095 ATPB g24640 ATPB g27020 ATPB g32149 ATPB g35777 ATPB g37484 ATPB g4614 ATPB g46963 ATPB g52136 ATPB g58000 ATPB g67889 ATPB g76377 ATPB g86374 ATPB g91964 BG g83286 CAMTA g48033 CAMTA g61609 CAT1,2,3 g103971 CAT1,2,3 g117512 CAT1,2,3 g24429 CAT1,2,3 g28438 CAT1,2,3 g41010 CAT1,2,3 g72671 CAT1,2,3 g81197 CLH g130010 CLH g18239 CLH g2021 CLH g47201 CLH g89960 CM g130404 CM g22769 CM g5318 CML42 g121937 CML42 g129127 CML42 g16981 CML42 g2366 COI1 g33598 COI1 g70164 COI1 g97382 CPK4,5,6,11 g102272 CPK4,5,6,11 g115444 CPK4,5,6,11 g16953 CPK4,5,6,11 g4734 CPK4,5,6,11 g77762 CPK4,5,6,11 g87506 CPK4,5,6,11 g91442 CPK4,5,6,11 g96367 CRT1,2 g60724 CRT1,2 g77424 CRT3 g115340 CRT3 g116773 CRT3 g95213 CRT3 g96456 CTR g103432 CTR g120747 CTR g129215 CTR g16526 CTR g35387 CTR g38396 CTR g41496 CTR g88578 CTR g90942 CTS g115059 CTS g29012 CUL g119576 CUL g119577 CUL g13200 CUL g26861 CUL g49121 CUL g63235 CUL g79599 CUL g89200 CUL g90041 CYP94 g111198 CYP94 g111199 CYP94 g111202 CYP94 g123792 CYP94 g128021 CYP94 g131017 CYP94 g13901 CYP94 g16162 CYP94 g20023 CYP94 g22283 CYP94 g36371 CYP94 g38100 CYP94 g40477 CYP94 g47079 CYP94 g54209 CYP94 g68582 CYP94 g8133 CYP94 g84350 CYP94 g84353 CYP94 g85696 CYP94 g86286 CYP94 g88543 CYP94 g89868 CYP94 g89905 DNAJ g101818 DNAJ g12451 DNAJ g128734 DNAJ g131650 DNAJ g18152 DNAJ g23615 DNAJ g39642 DNAJ g67751 DXPS g125744 DXPS g48659 DXPS g66602 DXPS g66604 DXPS g86929 DXPS g86938 DXPS g886 DXPS g89074 DXPS g98673 EBF g14686 EBF g56749 EBF g57039 EBF g67259 EBF g93993 EDF g101645 EDF g125644 EDF g12642 EDF g126625 EDF g17423 EDF g51452 EDF g6438 EDS5 g36954 EDS5 g66544 EDS5 g96223 EIN2 g121008 EIN2 g29542 EIN2 g29544 EIN3(EIL1) g1948 EIN3(EIL1) g1949 EIN3(EIL1) g45756 EIN3(EIL1) g60062 EIN3(EIL1) g78150 EIN3(EIL1) g7904 EIN3(EIL1) g90994 EIN3(EIL1) g90995 ERF098 g38402 ERF098 g49641 ERF098 g63639 ERF098 g6738 ERF1,2 g100796 ERF1,2 g115960 ERF1,2 g125427 ERF1,2 g131706 ERF1,2 g1645 ERF1,2 g1648 ERF1,2 g1650 ERF1,2 g23664 ERF1,2 g264 ERF1,2 g33467 ERF1,2 g38403 ERF1,2 g46378 ERF1,2 g49640 ERF1,2 g63647 ERF1,2 g6734 ERF1,2 g79337 ERF1,2 g81609 ERF1,2 g81610 ERF1,2 g85889 ERF1,2 g87202 ERF1,2 g97002 ERF1,2 g97255 ERF104 g97252 ERF105 g109595 ERF105 g109597 ERF105 g113178 ERF105 g23665 ERF105 g37276 ERF105 g82709 ERF105 g82713 ERF13 g1760 ERF13 g1761 ERF13 g1764 ERF13 g1766 ERF13 g1767 ERF13 g1772 ERF13 g61783 ERF13 g61808 ERF14,95,96 g38400 ERF14,95,96 g49643 ERF14,95,96 g63637 ERF5,6 g1661 ERF5,6 g34191 ETR g107030 ETR g115669 ETR g125446 ETR g30322 ETR g44349 ETR g63054 ETR g64264 ETR g64272 ETR g79151 ETR g79153 ETR g79292 ETR g85858 ETR g93323 ETR g93325 ETR g96725 FLS2 g12722 FLS2 g132139 FLS2 g23791 FLS2 g24004 FLS2 g26107 GRAS2 g100940 GRAS2 g121413 GRAS2 g128358 GRAS2 g13535 GRAS2 g2754 GRAS2 g33365 GRAS2 g3770 GRAS2 g60672 GRAS2 g74427 GRAS2 g92118 GRAS2 g97511 GRAS2 g97515 GRX480 g106066 GRX480 g124889 GRX480 g19059 GRX480 g23636 GRX480 g78867 GSNO g46556 GSNO g6884 GST g119629 GST g122811 GST g122814 GST g127836 GST g15664 GST g19639 GST g19640 GST g19643 GST g19646 GST g19647 GST g19648 GST g19650 GST g19651 GST g25293 GST g30294 GST g30295 GST g41069 GST g48748 GST g93328 GST g93332 HMA g117269 HMA g118697 HMA g21102 HMA g24345 HMA g56927 HMA g56932 HMA g61599 HMA g67142 HMA g67144 HMA g67403 HMA g67404 HMA g73310 HMA g76724 HMA g99600 HMA g99601 HMA g99602 HMA g99604 ICS g74805 ICS g92328 JAM1,2 g116180 JAM1,2 g29334 JAM1,2 g59887 JAM1,2 g78340 JAM3 g13034 JAM3 g90191 JAR g116138 JAR g12207 JAR g12210 JAR g124769 JAR g18950 JAR g42160 JAR g59793 JAR g78429 JAR g97739 JAR g99312 JAZ1,2,5,6 g123365 JAZ1,2,5,6 g14280 JAZ1,2,5,6 g43354 JAZ1,2,5,6 g94936 JMT g104408 JMT g132757 JMT g26337 JMT g33245 JMT g3750 KAT g64133 KAT g95036 LOX g110071 LOX g112926 LOX g127892 LOX g21233 LOX g21237 LOX g21245 LOX g22132 LOX g22135 LOX g24448 LOX g35663 LOX g35665 LOX g36022 LOX g36026 LOX g46940 LOX g46941 LOX g46942 LOX g53171 LOX g60481 LOX g60482 LOX g60486 LOX g7258 LOX g83441 LOX g85090 LOX g88930 LOX g9020 LOX g9407 LOX g9417 MES g10693 MES g118062 MES g47512 MES g58511 MES g58514 MES g58515 MES g76430 MES g76431 MES g76432 MFP g122541 MFP g126860 MFP g130903 MFP g14526 MFP g22372 MFP g30671 MFP g4430 MFP g51549 MFP g56085 MFP g70445 MFP g74040 MFP g94197 MIND1 g110094 MIND1 g83354 MOS g10091 MOS g108659 MOS g119658 MOS g124474 MOS g36062 MOS g40451 MOS g40452 MOS g45333 MOS g48239 MOS g52453 MOS g60679 MOS g70255 MOS g9063 MOS g91420 MPK3 g27688 MPK4 g116083 MPK4 g59654 MPK4 g97771 MPK6 g129693 MPK6 g129698 MPK6 g37735 MPK6 g75416 MPK6 g8740 MYB113 g2832 MYB113 g36580 MYB113 g36585 MYB44,70,73 g108320 MYB44,70,73 g27243 MYB44,70,73 g34850 MYB44,70,73 g35084 MYB44,70,73 g6255 MYB44,70,73 g66321 MYB44,70,73 g82483 MYC g12348 MYC g28044 MYC g343 MYC g45954 MYC g53879 MYC g85635 MYC g91892 MYC g99241 MYC g99248 NAC19,55,72 g30836 NAC19,55,72 g93354 NAC19,55,72 g93359 NAC32 g103126 NAC32 g6179 NAC32 g68617 NADPH-oxidase g109059 NADPH-oxidase g112197 NADPH-oxidase g123408 NADPH-oxidase g14259 NADPH-oxidase g20731 NADPH-oxidase g43307 NADPH-oxidase g44992 NADPH-oxidase g60545 NADPH-oxidase g73486 NADPH-oxidase g74555 NADPH-oxidase g89678 NADPH-oxidase g94918 NADPH-oxidase g95984 NDA g119355 NDA g127448 NDA g23404 NDB g124806 NDB g124810 NDB g131293 NDB g21853 NDB g21855 NDB g23352 NDB g42168 NDB g42170 NDB g99861 NDB g99867 NDC g33617 NDC g97425 NPR1 g122900 NPR1 g43549 OBE g42903 OBE g96149 OBE g96952 OMR1 g120824 OMR1 g16913 OMR1 g16915 OMR1 g2971 OMR1 g35271 OMR1 g36693 OMR1 g88615 OPR g132601 OPR g54897 OPR g56859 OPR g61150 OPR g65915 OPR g65921 OPR g75990 OPR g80594 PA g114938 PA g28943 PAL g114261 PAL g115330 PAL g120999 PAL g2907 PAL g29548 PAL g36600 PAL g59930 PAL g63176 PAL g65016 PAL g66333 PAL g83183 PAL g86802 PAL g95194 PAL g96468 PBB g16305 PBB g40331 PBB g4501 PBE g114282 PBE g115329 PBE g95187 PBE g96472 PR1 g16479 PR1 g58066 PR1 g58067 PR1 g58068 PR1 g58073 PR1 g72208 PR1 g72210 PR1 g72225 PR1 g85659 PR1 g87733 PR1 g87761 PR3 g117477 PR3 g118476 PR3 g16535 PR3 g24398 PR3 g24502 PR3 g52729 PR3 g82161 PR3 g87521 PR4 g60131 PR4 g60136 PR4 g78067 PR5 g104627 PR5 g32002 PSAK g27483 PSAK g33887 PSAK g8456 RBCL g104803 RBCL g108209 RBCL g10824 RBCL g111146 RBCL g112616 RBCL g113640 RBCL g119538 RBCL g121676 RBCL g13741 RBCL g16657 RBCL g23241 RBCL g27019 RBCL g27198 RBCL g35778 RBCL g39817 RBCL g40381 RBCL g41655 RBCL g46965 RBCL g57999 RBCL g76376 RBCL g86204 RBCL g86375 RBCL g98380 RBCL g98509 RBCS g10887 RBCS g10893 RBCS g132485 RBCS g24736 RBCS g24737 RBCS g24746 RBCS g49080 RBCS g49082 RBCS g56244 RGA1,2 g111134 RGA1,2 g111137 RGA1,2 g11176 RGA1,2 g115911 RGA1,2 g115993 RGA1,2 g115994 RGA1,2 g116003 RGA1,2 g119686 RGA1,2 g121803 RGA1,2 g125566 RGA1,2 g125569 RGA1,2 g126803 RGA1,2 g130972 RGA1,2 g22242 RGA1,2 g33361 RGA1,2 g55713 RGA1,2 g62801 RGA1,2 g62802 RGA1,2 g63898 RGA1,2 g69890 RGA1,2 g79033 RGA1,2 g79034 RGA1,2 g84299 RGA1,2 g84300 RGA1,2 g87000 RGA1,2 g87004 RGA1,2 g97521 RH g16549 RH g71605 RH g99438 RH g99450 RTE1 g61421 RTE1 g66861 RTE1 g76852 RTE1 g98443 SAG101 g117758 SAG101 g25546 SAG101 g70382 SAG12 g129927 SAG12 g131773 SAG12 g131781 SAG12 g23743 SAG12 g41575 SAGT g53286 SAHH g111243 SAHH g116314 SAHH g64887 SAHH g79803 SAHH g84405 SAHH g84406 SAHH g97642 SAMS g120923 SAMS g16874 SAMS g2852 SAMS g35147 SAMS g35515 SAMS g51718 SAMS g60842 SAMS g6562 SAMS g77299 SAMS g88654 SAMS g9630 SAMS g97562 SEN4 g20040 SERK g102961 SERK g31757 SERK g5787 SERK g61550 SERK g61553 SERK g76751 SERK g82180 SOD g109538 SOD g114264 SOD g116584 SOD g11845 SOD g33505 SOD g51003 SOD g57918 SOD g73134 SOD g82633 SOD g83186 SOD g89102 SOD g89104 SOD g89106 SOD g95192 SOD g95351 SOD g97289 SOD g99779 TDX g112292 TGA2,5,6 g129321 TGA2,5,6 g15400 TGA2,5,6 g17383 TGA2,5,6 g68712 TGA2,5,6 g7831 TGA2,5,6 g88154 TRX-H g132812 WAK g121785 WAK g121786 WAK g121787 WAK g128826 WAK g128833 WAK g128834 WAK g2723 WAK g97303 WD40 g110530 WD40 g83732 WRKY11,17 g15912 WRKY11,17 g18994 WRKY11,17 g25817 WRKY11,17 g725 WRKY33 g121836 WRKY33 g127497 WRKY33 g128918 WRKY57 g17734 WRKY57 g37745 XRN g116751 XRN g15626 XRN g40376 XRN g65242 XRN g72960 XRN g95246 bHLH g23902 bHLH g25617 bHLH g30853 bHLH g63320 bHLH g63322 bHLH g68524 bHLH g73355 bHLH g79440 bHLH g99545
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Created: 11th Apr 2022 at 14:16
Last updated: 21st Sep 2022 at 10:45
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Version 1 (earliest) Created 11th Apr 2022 at 14:16 by Marko Petek
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https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Short Name: T21_SXPsysbio Title: Use a systems biology approach to identify regulatory bottlenecks in SxPv1 Description: Samples from SXPv1.0 plants as well as sister nulls (progeny from the original transgenic event in which the transgene has segregated) and wild type will be grown and leaf samples taken for RNA extraction and profiling of primary metabolites and volatiles (target pheromones as well as potential derivatives) (P1, P5). Phenotypic and GC-MS data will be obtained and analysed from ...
Submitter: Marko Petek
Studies: Investigation files, _S_P1_SPv10T0andT1, _S_P1_SPv10T2andT3, _S_P1_SPv1TransientExp, _S_P1_SxPAltAcTransferases, _S_P1_SxPv10vsSxP12, _S_P1_SxPv12T2, _S_P4_CoExpNetViz, _S_P4_DiNAR, _S_P4_GAtreat, _S_P4_SxP10-newG-DE, _S_P4_SxP10-oldG-DE, _S_P4_SxP1012-finalG, _S_P4_SxP12-newG-DE
Assays: _A_00_SxP_photos-phenotyping, _A_01_RNA1-RNAisol, _A_01_SxP_Data_Only-CoExp, _A_01_SxPv12_fastq-QC, _A_01_mapping-CLC, _A_01_toNewGenome-CLC-mapping, _A_02_FastQC-bioinfo, _A_02_Nb_datasets-CoExp, _A_02_SxPv12_mapping-CLC, _A_02_limmavoomDE-R, _A_02a_limmavoom-multim-R, _A_02a_limmavoomDEbylines-R, _A_02b_limmavoom-uniquem-R, _A_03_MapMan-visualisation, _A_03_NewGenome-MapMan, _A_03_SxPv12_limmavoom_DE-R, _A_03_mapping-CLC, _A_03a_mapping2-STAR, _A_04_GSEA-Stat, _A_04_MapManBINenrich-GSEA, _A_04_Mercator-bioinfo, _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA, _A_05_DEstat-R, _A_05_Phenotype_analysis-Stat, _A_05_VOCcomp-Bioinfo, _A_05a_DEstat2-R, _A_05b_DElow-wt-R, _A_06_MapMan-bioinfo, _A_06_SxPv1-0_Illumina-Centrifuge, _A_07_NbAUSv1-0-InterPro, _A_07_transgenes-CLC, _A_CKN-DiNAR, _A_CKN_NbL35-DiNAR, _A_LeavesSxPv10vsv12-GCMS, _A_P4_v10v12-phenotyping, _A_PIS-DiNAR, _A_PIS-SxPv12-DiNAR, _A_PIS_NbL35-DiNAR, _A_RootsSxPv10vsv12-GCMS, _A_SP10T0Analysis-GCMS, _A_SP10T1Analysis-GCMS, _A_SPv10EaDActAnalysis-GCMS, _A_SPv10T2Analysis-GCMS, _A_SPv10T3Analysis-GCMS, _A_SPv10_phenotyping-Images, _A_SxPAlternativeAcetyltransferases-GCMS, _A_SxPv10vsv12-phenotyping, _A_SxPv12ScreeningT2-GCMS, _A_TransientSPv11andSPv12-GCMS, _I_T21_SXPsysbio-files, _S_P1_SPv10T0andT1-files, _S_P1_SPv10T2andT3-files, _S_P1_SPv1TransientExp-files, _S_P1_SxPAltAcTransferases-files, _S_P1_SxPv10vsSxP12-files, _S_P1_SxPv12T2-files, _S_P4_CoExpNetViz-files, _S_P4_DiNAR-files, _S_P4_GAtreat-files, _S_P4_SxP10-newG-DE-files, _S_P4_SxP10-oldG-DE-files, _S_P4_SxP1012-finalG-files, _S_P4_SxP12-newG-DE-files
Short Name: DiNAR Title: DiNAR analyses of SxP DE data Description: DiNAR visualisation of SxPv1.0 and SxPv1.2 expressoin data in either PIS or CKN networks. Raw Data: Principal investigator: Ĺ pela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Investigation: _I_T21_SXPsysbio
Assays: _A_CKN-DiNAR, _A_CKN_NbL35-DiNAR, _A_PIS-DiNAR, _A_PIS-SxPv12-DiNAR, _A_PIS_NbL35-DiNAR, _S_P4_DiNAR-files
Short Name: PIS-SxPv12-DiNAR Assay Class: DRY Assay Type: DiNAR Title: SxP v1.2 DE genes visualised in DiNAR Description: Visualisation of DE genes from SxPv1.2 data in PIS network. Mapping to genome v1, contrasts by lines (low1, low2, high1, high2) pISA Assay creation date: 2021-11-10 pISA Assay creator: MJU Phenodata: ../../phenodata_20191104.txt Featuredata: Data:
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T21_SXPsysbio
Study: _S_P4_DiNAR
