output/PhenodataForPlots.txt Version 1
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_GAtreat/_A_P4_v10v12-phenotyping/
SEEK ID: https://fairdomhub.org/data_files/5118?version=1
Filename:
output/PhenodataForPlots.txt
Format: Plain text document
Size: 20 KB
Plant Line Version Tray Treatment Group Height1 Height2 Height3 Height4 Height5 FreshWeight DryWeight GrowthRate1 GrowthRate2 GrowthRate3 GrowthRate4 GrowthRate5 w_c_1-1 wt / 1 C wt_C 2.8 4.1 5.2 7.6 11.3 5.85 0.742 0.464285714 0.268292683 0.461538462 0.486842105 3.035714286 w_c_1-2 wt / 1 C wt_C 4 4.8 6.9 8.4 14.2 5.75 0.753 0.2 0.4375 0.217391304 0.69047619 2.55 w_c_1-3 wt / 1 C wt_C 3.5 4 5.9 7.8 12.2 6.47 0.765 0.142857143 0.475 0.322033898 0.564102564 2.485714286 w_c_1-4 wt / 1 C wt_C 3 3.7 5.2 6.5 10 3.76 0.451 0.233333333 0.405405405 0.25 0.538461538 2.333333333 w_c_2-1 wt / 2 C wt_C 2.8 4.6 6 7.3 12 7.9 0.899 0.642857143 0.304347826 0.216666667 0.643835616 3.285714286 w_c_2-2 wt / 2 C wt_C 3.3 4.6 5.9 6.4 10.7 4.92 0.563 0.393939394 0.282608696 0.084745763 0.671875 2.242424242 w_c_2-3 wt / 2 C wt_C 3.2 4 5.8 5.3 8.8 3.23 0.386 0.25 0.45 -0.086206897 0.660377358 1.75 w_c_2-4 wt / 2 C wt_C 3.3 4.6 5.8 6.7 10.9 5.19 0.603 0.393939394 0.260869565 0.155172414 0.626865672 2.303030303 w_1_1-1 wt / 1 1 wt_1 4 4.6 6.5 8.4 13.7 6.28 0.183 0.15 0.413043478 0.292307692 0.630952381 2.425 w_1_1-2 wt / 1 1 wt_1 3.2 4.3 5.5 7.2 11.4 5.18 0.378 0.34375 0.279069767 0.309090909 0.583333333 2.5625 w_1_1-3 wt / 1 1 wt_1 4.3 5.7 7.2 10.1 14.5 4.88 0.636 0.325581395 0.263157895 0.402777778 0.435643564 2.372093023 w_1_1-4 wt / 1 1 wt_1 3.6 5.4 8.2 9.6 15.8 4.01 0.651 0.5 0.518518519 0.170731707 0.645833333 3.388888889 w_1_2-1 wt / 2 1 wt_1 4.4 5.1 6.1 7.6 10.9 NA 0.443 0.159090909 0.196078431 0.245901639 0.434210526 1.477272727 w_1_2-2 wt / 2 1 wt_1 3.2 4.7 6.1 7.8 13.7 5.32 0.577 0.46875 0.29787234 0.278688525 0.756410256 3.28125 w_1_2-3 wt / 2 1 wt_1 3.3 4.8 6.8 8.8 14.5 5.53 0.661 0.454545455 0.416666667 0.294117647 0.647727273 3.393939394 w_1_2-4 wt / 2 1 wt_1 3.6 5.9 7.2 9 14.7 5.85 0.678 0.638888889 0.220338983 0.25 0.633333333 3.083333333 w_10_1-1 wt / 1 10 wt_10 4.3 5.4 8.9 10.9 19 5.9 0.748 0.255813953 0.648148148 0.224719101 0.743119266 3.418604651 w_10_1-2 wt / 1 10 wt_10 5.5 8.6 10.9 14.6 22.4 5.29 0.756 0.563636364 0.26744186 0.339449541 0.534246575 3.072727273 w_10_1-3 wt / 1 10 wt_10 5.1 8 10.4 14.4 22.4 3.73 0.519 0.568627451 0.3 0.384615385 0.555555556 3.392156863 w_10_1-4 wt / 1 10 wt_10 4.8 7.1 10 13 19.3 5.07 0.636 0.479166667 0.408450704 0.3 0.484615385 3.020833333 w_10_2-1 wt / 2 10 wt_10 5.9 8.6 12.2 17.2 25.4 5.07 0.721 0.457627119 0.418604651 0.409836066 0.476744186 3.305084746 w_10_2-2 wt / 2 10 wt_10 4.8 8.2 9.7 11 16.4 4.05 0.409 0.708333333 0.182926829 0.134020619 0.490909091 2.416666667 w_10_2-3 wt / 2 10 wt_10 5.9 7.9 10.4 13.8 20.9 5.54 0.675 0.338983051 0.316455696 0.326923077 0.514492754 2.542372881 w_10_2-4 wt / 2 10 wt_10 2.4 NA NA 6.5 10 2.2 0.175 NA NA NA 0.538461538 3.166666667 w_100_1-1 wt / 1 100 wt_100 4.2 6.6 8.8 13.4 20.7 3.76 0.343 0.571428571 0.333333333 0.522727273 0.544776119 3.928571429 w_100_1-2 wt / 1 100 wt_100 4.2 8.8 13.5 18 27.6 6.18 0.599 1.095238095 0.534090909 0.333333333 0.533333333 5.571428571 w_100_1-3 wt / 1 100 wt_100 4.8 8.3 8.7 14.8 21.7 3.6 0.335 0.729166667 0.048192771 0.701149425 0.466216216 3.520833333 w_100_1-4 wt / 1 100 wt_100 5.6 9 12.2 18.4 29.8 5.8 0.569 0.607142857 0.355555556 0.508196721 0.619565217 4.321428571 w_100_2-1 wt / 2 100 wt_100 NA NA NA NA 13.5 0.61 NA NA NA NA NA NA w_100_2-2 wt / 2 100 wt_100 5.3 9.6 13.7 18.5 28.5 4.9 0.533 0.811320755 0.427083333 0.350364964 0.540540541 4.377358491 w_100_2-3 wt / 2 100 wt_100 5.7 9.4 13 17.5 28.4 4.34 0.536 0.649122807 0.382978723 0.346153846 0.622857143 3.98245614 w_100_2-4 wt / 2 100 wt_100 3.9 6.3 9.2 14.5 23.5 3.62 0.327 0.615384615 0.46031746 0.576086957 0.620689655 5.025641026 5.2_c_1-1 1.0_5.2.5_low v1.0 1 C 1.0_low_C 3.4 5.3 6.5 7.9 13.4 5.82 0.772 0.558823529 0.226415094 0.215384615 0.696202532 2.941176471 5.2_c_1-2 1.0_5.2.5_low v1.0 1 C 1.0_low_C 3.8 4.9 6.3 7.9 12.9 5.46 0.627 0.289473684 0.285714286 0.253968254 0.632911392 2.394736842 5.2_c_1-3 1.0_5.2.5_low v1.0 1 C 1.0_low_C NA NA NA NA NA NA NA NA NA NA NA NA 5.2_c_1-4 1.0_5.2.5_low v1.0 1 C 1.0_low_C 4 5.5 6.5 7.6 13.1 5.21 0.623 0.375 0.181818182 0.169230769 0.723684211 2.275 5.2_c_2-1 1.0_5.2.5_low v1.0 2 C 1.0_low_C 3.8 4.1 4.9 6 9.3 4.64 0.379 0.078947368 0.195121951 0.224489796 0.55 1.447368421 5.2_c_2-2 1.0_5.2.5_low v1.0 2 C 1.0_low_C NA NA NA NA NA NA NA NA NA NA NA NA 5.2_c_2-3 1.0_5.2.5_low v1.0 2 C 1.0_low_C 3 4 5 5.2 7.7 2.71 0.301 0.333333333 0.25 0.04 0.480769231 1.566666667 5.2_c_2-4 1.0_5.2.5_low v1.0 2 C 1.0_low_C 2.9 4.2 4.7 5.2 6.3 1.83 0.303 0.448275862 0.119047619 0.106382979 0.211538462 1.172413793 5.2_1_1-1 1.0_5.2.5_low v1.0 1 1 1.0_low_1 3.7 4.4 4.5 5.4 8.8 3.71 0.37 0.189189189 0.022727273 0.2 0.62962963 1.378378378 5.2_1_1-2 1.0_5.2.5_low v1.0 1 1 1.0_low_1 4 4.1 5.2 6.9 10.8 3.15 0.34 0.025 0.268292683 0.326923077 0.565217391 1.7 5.2_1_1-3 1.0_5.2.5_low v1.0 1 1 1.0_low_1 NA NA NA NA NA NA NA NA NA NA NA NA 5.2_1_1-4 1.0_5.2.5_low v1.0 1 1 1.0_low_1 2.5 3.9 4.4 5.7 8.2 1.17 0.109 0.56 0.128205128 0.295454545 0.438596491 2.28 5.2_1_2-1 1.0_5.2.5_low v1.0 2 1 1.0_low_1 3.8 5.9 6.5 7.9 13.8 4.13 0.473 0.552631579 0.101694915 0.215384615 0.746835443 2.631578947 5.2_1_2-2 1.0_5.2.5_low v1.0 2 1 1.0_low_1 NA NA NA NA NA NA NA NA NA NA NA NA 5.2_1_2-3 1.0_5.2.5_low v1.0 2 1 1.0_low_1 4.1 5.6 6.3 5.6 10.7 1.57 0.159 0.365853659 0.125 -0.111111111 0.910714286 1.609756098 5.2_1_2-4 1.0_5.2.5_low v1.0 2 1 1.0_low_1 NA NA NA NA NA NA NA NA NA NA NA NA 5.2_10_1-1 1.0_5.2.5_low v1.0 1 10 1.0_low_10 4.5 7.2 8 10.1 18.3 3.13 0.319 0.6 0.111111111 0.2625 0.811881188 3.066666667 5.2_10_1-2 1.0_5.2.5_low v1.0 1 10 1.0_low_10 NA NA NA NA NA NA NA NA NA NA NA NA 5.2_10_1-3 1.0_5.2.5_low v1.0 1 10 1.0_low_10 4.9 6.5 8 9.9 17.3 4.06 0.439 0.326530612 0.230769231 0.2375 0.747474747 2.530612245 5.2_10_1-4 1.0_5.2.5_low v1.0 1 10 1.0_low_10 NA NA NA NA NA NA NA NA NA NA NA NA 5.2_10_2-1 1.0_5.2.5_low v1.0 2 10 1.0_low_10 4.4 6.8 9 11.9 18.9 4.25 0.505 0.545454545 0.323529412 0.322222222 0.588235294 3.295454545 5.2_10_2-2 1.0_5.2.5_low v1.0 2 10 1.0_low_10 5.5 7.3 8.5 11.2 19.6 3.68 0.358 0.327272727 0.164383562 0.317647059 0.75 2.563636364 5.2_10_2-3 1.0_5.2.5_low v1.0 2 10 1.0_low_10 NA NA NA NA NA NA NA NA NA NA NA NA 5.2_10_2-4 1.0_5.2.5_low v1.0 2 10 1.0_low_10 4.4 7 8.3 11 19 2.94 0.369 0.590909091 0.185714286 0.325301205 0.727272727 3.318181818 5.2_100_1-1 1.0_5.2.5_low v1.0 1 100 1.0_low_100 4.9 6.5 8.9 11.8 20.7 4.25 0.442 0.326530612 0.369230769 0.325842697 0.754237288 3.224489796 5.2_100_1-2 1.0_5.2.5_low v1.0 1 100 1.0_low_100 5.5 7.3 9.1 10.8 18 2.07 0.186 0.327272727 0.246575342 0.186813187 0.666666667 2.272727273 5.2_100_1-3 1.0_5.2.5_low v1.0 1 100 1.0_low_100 6.2 10.4 14.2 18.4 29.3 3.94 0.521 0.677419355 0.365384615 0.295774648 0.592391304 3.725806452 5.2_100_1-4 1.0_5.2.5_low v1.0 1 100 1.0_low_100 NA NA NA NA NA NA NA NA NA NA NA NA 5.2_100_2-1 1.0_5.2.5_low v1.0 2 100 1.0_low_100 5.7 10.9 13.3 17.5 26.9 4.03 0.494 0.912280702 0.220183486 0.315789474 0.537142857 3.719298246 5.2_100_2-2 1.0_5.2.5_low v1.0 2 100 1.0_low_100 4.5 7.4 9.2 11 18.5 2.55 0.29 0.644444444 0.243243243 0.195652174 0.681818182 3.111111111 5.2_100_2-3 1.0_5.2.5_low v1.0 2 100 1.0_low_100 NA NA NA NA NA NA NA NA NA NA NA NA 5.1_c_1-1 1.0_5.1.7_high v1.0 1 C 1.0_high_C 3.7 2.9 4.7 6.1 7.5 4.25 0.569 -0.216216216 0.620689655 0.29787234 0.229508197 1.027027027 5.1_c_1-2 1.0_5.1.7_high v1.0 1 C 1.0_high_C 2.1 3.1 3.6 4.5 6.2 3.18 0.25 0.476190476 0.161290323 0.25 0.377777778 1.952380952 5.1_c_1-3 1.0_5.1.7_high v1.0 1 C 1.0_high_C 3.7 4.2 4.1 5.5 7.7 4.47 0.609 0.135135135 -0.023809524 0.341463415 0.4 1.081081081 5.1_c_1-4 1.0_5.1.7_high v1.0 1 C 1.0_high_C 3.6 4.5 4.7 5.4 7.4 5.57 0.619 0.25 0.044444444 0.14893617 0.37037037 1.055555556 5.1_c_1-5 1.0_5.1.7_high v1.0 1 C 1.0_high_C 4.6 4.5 5.4 6.3 8.8 5.22 0.778 -0.02173913 0.2 0.166666667 0.396825397 0.913043478 5.1_c_2-1 1.0_5.1.7_high v1.0 2 C 1.0_high_C 3.3 4.2 4.8 5.6 7.2 6.13 0.692 0.272727273 0.142857143 0.166666667 0.285714286 1.181818182 5.1_c_2-2 1.0_5.1.7_high v1.0 2 C 1.0_high_C 3.6 4.9 4.9 6.1 7.6 5.8 0.831 0.361111111 0 0.244897959 0.245901639 1.111111111 5.1_c_2-3 1.0_5.1.7_high v1.0 2 C 1.0_high_C 3.2 4.2 4.8 6.3 7.2 5.24 0.624 0.3125 0.142857143 0.3125 0.142857143 1.25 5.1_c_2-4 1.0_5.1.7_high v1.0 2 C 1.0_high_C 3 3.9 4.5 5.8 7.1 3.41 0.448 0.3 0.153846154 0.288888889 0.224137931 1.366666667 5.1_1_1-1 1.0_5.1.7_high v1.0 1 1 1.0_high_1 3.9 5 5.7 7.8 9.7 5.19 0.803 0.282051282 0.14 0.368421053 0.243589744 1.487179487 5.1_1_1-2 1.0_5.1.7_high v1.0 1 1 1.0_high_1 4.5 5.3 5 7.9 12.4 6.88 0.927 0.177777778 -0.056603774 0.58 0.569620253 1.755555556 5.1_1_1-3 1.0_5.1.7_high v1.0 1 1 1.0_high_1 3 3.9 4.3 6.4 8.9 4.72 0.455 0.3 0.102564103 0.488372093 0.390625 1.966666667 5.1_1_1-4 1.0_5.1.7_high v1.0 1 1 1.0_high_1 NA NA NA NA NA NA NA NA NA NA NA NA 5.1_1_1-5 1.0_5.1.7_high v1.0 1 1 1.0_high_1 NA 4.6 4.6 5.1 7.6 2.19 0.157 NA 0 0.108695652 0.490196078 NA 5.1_1_2-1 1.0_5.1.7_high v1.0 2 1 1.0_high_1 3.5 4.3 5.6 7.2 9.5 4.98 0.546 0.228571429 0.302325581 0.285714286 0.319444444 1.714285714 5.1_1_2-2 1.0_5.1.7_high v1.0 2 1 1.0_high_1 3.9 5.5 5.8 7.7 9.4 6.2 0.234 0.41025641 0.054545455 0.327586207 0.220779221 1.41025641 5.1_1_2-3 1.0_5.1.7_high v1.0 2 1 1.0_high_1 4.2 3.8 4.6 6.4 8.9 4.68 0.227 -0.095238095 0.210526316 0.391304348 0.390625 1.119047619 5.1_1_2-4 1.0_5.1.7_high v1.0 2 1 1.0_high_1 3.2 4.7 5.7 7.9 10.5 5.34 0.415 0.46875 0.212765957 0.385964912 0.329113924 2.28125 5.1_10_1-1 1.0_5.1.7_high v1.0 1 10 1.0_high_10 4.1 5.3 6.8 8.7 14.8 5.14 0.424 0.292682927 0.283018868 0.279411765 0.701149425 2.609756098 5.1_10_1-2 1.0_5.1.7_high v1.0 1 10 1.0_high_10 4.8 5.7 6.8 8.9 14.7 4.51 0.266 0.1875 0.192982456 0.308823529 0.651685393 2.0625 5.1_10_1-3 1.0_5.1.7_high v1.0 1 10 1.0_high_10 3.6 5.2 6.1 8.1 13.9 4.23 0.285 0.444444444 0.173076923 0.327868852 0.716049383 2.861111111 5.1_10_1-4 1.0_5.1.7_high v1.0 1 10 1.0_high_10 4.9 5.8 5.8 8.8 13.5 2.6 0.243 0.183673469 0 0.517241379 0.534090909 1.755102041 5.1_10_1-5 1.0_5.1.7_high v1.0 1 10 1.0_high_10 4.5 6.4 7.1 9.2 13.3 4.9 0.561 0.422222222 0.109375 0.295774648 0.445652174 1.955555556 5.1_10_2-1 1.0_5.1.7_high v1.0 2 10 1.0_high_10 4.7 5.5 6.6 9.5 15.8 5.06 0.568 0.170212766 0.2 0.439393939 0.663157895 2.361702128 5.1_10_2-2 1.0_5.1.7_high v1.0 2 10 1.0_high_10 3.9 5.3 5.7 8.3 11.5 4.69 0.536 0.358974359 0.075471698 0.456140351 0.385542169 1.948717949 5.1_10_2-3 1.0_5.1.7_high v1.0 2 10 1.0_high_10 5.2 5.2 6.2 8.3 12 5.27 0.616 0 0.192307692 0.338709677 0.445783133 1.307692308 5.1_10_2-4 1.0_5.1.7_high v1.0 2 10 1.0_high_10 5.7 5.7 6.3 8.5 11.9 4.7 0.571 0 0.105263158 0.349206349 0.4 1.087719298 5.1_100_1-1 1.0_5.1.7_high v1.0 1 100 1.0_high_100 4.7 7 8.2 13.1 21.6 6.18 0.743 0.489361702 0.171428571 0.597560976 0.648854962 3.595744681 5.1_100_1-2 1.0_5.1.7_high v1.0 1 100 1.0_high_100 3.6 6 7.7 11.1 18.4 4.27 0.471 0.666666667 0.283333333 0.441558442 0.657657658 4.111111111 5.1_100_1-3 1.0_5.1.7_high v1.0 1 100 1.0_high_100 4.1 8.2 8.3 12.6 21.7 4.31 0.45 1 0.012195122 0.518072289 0.722222222 4.292682927 5.1_100_1-4 1.0_5.1.7_high v1.0 1 100 1.0_high_100 NA NA NA NA NA NA NA NA NA NA NA NA 5.1_100_1-5 1.0_5.1.7_high v1.0 1 100 1.0_high_100 NA NA NA NA NA NA NA NA NA NA NA NA 5.1_100_2-1 1.0_5.1.7_high v1.0 2 100 1.0_high_100 4.4 6.5 8.2 12.4 21.2 3.9 0.409 0.477272727 0.261538462 0.512195122 0.709677419 3.818181818 5.1_100_2-2 1.0_5.1.7_high v1.0 2 100 1.0_high_100 5 6.9 9.1 12.3 21.4 5.22 0.546 0.38 0.31884058 0.351648352 0.739837398 3.28 5.1_100_2-3 1.0_5.1.7_high v1.0 2 100 1.0_high_100 5.2 5.8 7.5 10.6 19.5 5.93 0.578 0.115384615 0.293103448 0.413333333 0.839622642 2.75 5.1_100_2-4 1.0_5.1.7_high v1.0 2 100 1.0_high_100 5.3 7 7.8 11.8 19.4 5.15 0.558 0.320754717 0.114285714 0.512820513 0.644067797 2.660377358 4.1_c_1-1 1.2_4.1 v1.2 1 C 1.2_4.1_C 4.8 6.5 6.7 8 11.9 7.53 0.973 0.354166667 0.030769231 0.194029851 0.4875 1.479166667 4.1_c_1-2 1.2_4.1 v1.2 1 C 1.2_4.1_C 3.9 5.7 6.2 7.3 10.2 6.02 0.716 0.461538462 0.087719298 0.177419355 0.397260274 1.615384615 4.1_c_1-3 1.2_4.1 v1.2 1 C 1.2_4.1_C 5.7 5.6 5.9 6.9 9 6.92 0.323 -0.01754386 0.053571429 0.169491525 0.304347826 0.578947368 4.1_c_1-4 1.2_4.1 v1.2 1 C 1.2_4.1_C 5.1 7.4 7.9 7.9 10.5 7.17 0.818 0.450980392 0.067567568 0 0.329113924 1.058823529 4.1_c_1-5 1.2_4.1 v1.2 1 C 1.2_4.1_C 4.1 5.4 6.2 6.8 9.4 7.22 0.913 0.317073171 0.148148148 0.096774194 0.382352941 1.292682927 4.1_c_1-6 1.2_4.1 v1.2 1 C 1.2_4.1_C 5 5.3 6.6 8 9 6.81 0.861 0.06 0.245283019 0.212121212 0.125 0.8 4.1_c_2-1 1.2_4.1 v1.2 2 C 1.2_4.1_C 4.9 6.3 6.9 6.9 10.8 5.91 0.665 0.285714286 0.095238095 0 0.565217391 1.204081633 4.1_c_2-2 1.2_4.1 v1.2 2 C 1.2_4.1_C 4 5.8 6.2 6.7 7.6 6.03 0.738 0.45 0.068965517 0.080645161 0.134328358 0.9 4.1_c_2-3 1.2_4.1 v1.2 2 C 1.2_4.1_C 3.4 6 5.6 6.5 8.3 6.52 0.737 0.764705882 -0.066666667 0.160714286 0.276923077 1.441176471 4.1_c_2-4 1.2_4.1 v1.2 2 C 1.2_4.1_C 3.5 6 6.2 6.8 9.3 7.25 0.874 0.714285714 0.033333333 0.096774194 0.367647059 1.657142857 4.1_c_2-5 1.2_4.1 v1.2 2 C 1.2_4.1_C 3.6 5 6.2 7 8.7 6.63 0.803 0.388888889 0.24 0.129032258 0.242857143 1.416666667 4.1_1_1-1 1.2_4.1 v1.2 1 1 1.2_4.1_1 NA NA NA NA NA NA NA NA NA NA NA NA 4.1_1_1-2 1.2_4.1 v1.2 1 1 1.2_4.1_1 5 6.2 7.9 8.2 13.2 6.91 0.774 0.24 0.274193548 0.037974684 0.609756098 1.64 4.1_1_1-3 1.2_4.1 v1.2 1 1 1.2_4.1_1 5.5 6.1 6.9 9.5 14.4 7.96 1.082 0.109090909 0.131147541 0.376811594 0.515789474 1.618181818 4.1_1_1-4 1.2_4.1 v1.2 1 1 1.2_4.1_1 6.6 6.9 7.9 9.4 13.3 5.77 0.579 0.045454545 0.144927536 0.189873418 0.414893617 1.015151515 4.1_1_1-5 1.2_4.1 v1.2 1 1 1.2_4.1_1 2.7 4.5 5.7 6 8.7 3.54 0.282 0.666666667 0.266666667 0.052631579 0.45 2.222222222 4.1_1_2-1 1.2_4.1 v1.2 2 1 1.2_4.1_1 3.7 4.2 5.2 NA NA NA NA 0.135135135 0.238095238 -1 NA -1 4.1_1_2-2 1.2_4.1 v1.2 2 1 1.2_4.1_1 4.8 6.2 6.9 8.5 13.2 7.43 0.685 0.291666667 0.112903226 0.231884058 0.552941176 1.75 4.1_1_2-3 1.2_4.1 v1.2 2 1 1.2_4.1_1 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Created: 9th Apr 2022 at 20:17
Last updated: 21st Sep 2022 at 10:46
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Version 1 (earliest) Created 9th Apr 2022 at 20:17 by Marko Petek
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https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Short Name: T21_SXPsysbio Title: Use a systems biology approach to identify regulatory bottlenecks in SxPv1 Description: Samples from SXPv1.0 plants as well as sister nulls (progeny from the original transgenic event in which the transgene has segregated) and wild type will be grown and leaf samples taken for RNA extraction and profiling of primary metabolites and volatiles (target pheromones as well as potential derivatives) (P1, P5). Phenotypic and GC-MS data will be obtained and analysed from ...
Submitter: Marko Petek
Studies: Investigation files, _S_P1_SPv10T0andT1, _S_P1_SPv10T2andT3, _S_P1_SPv1TransientExp, _S_P1_SxPAltAcTransferases, _S_P1_SxPv10vsSxP12, _S_P1_SxPv12T2, _S_P4_CoExpNetViz, _S_P4_DiNAR, _S_P4_GAtreat, _S_P4_SxP10-newG-DE, _S_P4_SxP10-oldG-DE, _S_P4_SxP1012-finalG, _S_P4_SxP12-newG-DE
Assays: _A_00_SxP_photos-phenotyping, _A_01_RNA1-RNAisol, _A_01_SxP_Data_Only-CoExp, _A_01_SxPv12_fastq-QC, _A_01_mapping-CLC, _A_01_toNewGenome-CLC-mapping, _A_02_FastQC-bioinfo, _A_02_Nb_datasets-CoExp, _A_02_SxPv12_mapping-CLC, _A_02_limmavoomDE-R, _A_02a_limmavoom-multim-R, _A_02a_limmavoomDEbylines-R, _A_02b_limmavoom-uniquem-R, _A_03_MapMan-visualisation, _A_03_NewGenome-MapMan, _A_03_SxPv12_limmavoom_DE-R, _A_03_mapping-CLC, _A_03a_mapping2-STAR, _A_04_GSEA-Stat, _A_04_MapManBINenrich-GSEA, _A_04_Mercator-bioinfo, _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA, _A_05_DEstat-R, _A_05_Phenotype_analysis-Stat, _A_05_VOCcomp-Bioinfo, _A_05a_DEstat2-R, _A_05b_DElow-wt-R, _A_06_MapMan-bioinfo, _A_06_SxPv1-0_Illumina-Centrifuge, _A_07_NbAUSv1-0-InterPro, _A_07_transgenes-CLC, _A_CKN-DiNAR, _A_CKN_NbL35-DiNAR, _A_LeavesSxPv10vsv12-GCMS, _A_P4_v10v12-phenotyping, _A_PIS-DiNAR, _A_PIS-SxPv12-DiNAR, _A_PIS_NbL35-DiNAR, _A_RootsSxPv10vsv12-GCMS, _A_SP10T0Analysis-GCMS, _A_SP10T1Analysis-GCMS, _A_SPv10EaDActAnalysis-GCMS, _A_SPv10T2Analysis-GCMS, _A_SPv10T3Analysis-GCMS, _A_SPv10_phenotyping-Images, _A_SxPAlternativeAcetyltransferases-GCMS, _A_SxPv10vsv12-phenotyping, _A_SxPv12ScreeningT2-GCMS, _A_TransientSPv11andSPv12-GCMS, _I_T21_SXPsysbio-files, _S_P1_SPv10T0andT1-files, _S_P1_SPv10T2andT3-files, _S_P1_SPv1TransientExp-files, _S_P1_SxPAltAcTransferases-files, _S_P1_SxPv10vsSxP12-files, _S_P1_SxPv12T2-files, _S_P4_CoExpNetViz-files, _S_P4_DiNAR-files, _S_P4_GAtreat-files, _S_P4_SxP10-newG-DE-files, _S_P4_SxP10-oldG-DE-files, _S_P4_SxP1012-finalG-files, _S_P4_SxP12-newG-DE-files
Short Name: Gibberelin_treatment Title: GA3 treatment of SxPs Description: SxP lines were treated with 3 different GA3 concentrations (1, 10 and 100 micromolar) and control solution. WT Nb plants were used for control. From v1.0 T3, low producing line 5_2_5 and high producing line 5_1_7 were used and from v1.2 T2 lines 4_1 and 4_3. Treatment was done for 5 consecutive weeks, once per week with spraying the leaves. Raw Data: Principal investigator: Ĺ pela Baebler License: Creative Commons Attribution ...
Submitter: Marko Petek
Investigation: _I_T21_SXPsysbio
Assay: AP4v10v12-phenotyping Short Name: P4v10v12-phenotyping Assay Class: WET Assay Type: phenotyping Title: Phenotyping of GA3 effect on SxP lines in comparison to wt Description: GA3 treated plants were followed for 35 days after transplanting in soil. Plant height was measured at 17, 21, 24, 28 and 35 days post planting in soil. At day 35 in soil, plants were collected, weighed and photographed for image analysis of leaf areas. The leaves and stems were dried and dry weigh measured. pISA Assay ...
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T21_SXPsysbio
Study: _S_P4_GAtreat
