Raw MS data files of the comparison of Sulfolobus solfataricus grown on either caseinhydrolysate or D-glucose. The numbers represents the fractions collected from the HPLC run (e.g. 22 indicates that this sample was collected from 21 min to 22 min). For MS analysis every two fractions were combined, indicated by double numbers (e.g. 80-81: combined fractions 80 and 81). Furhter all combined fractions were run twice on the MS. Zip archive. Requires the supplementary .z01, .z02 and .z03 files for file extraction.
Description: Raw MS data files of the comparison of Sulfolobus solfataricus grown on either caseinhydrolysate or D-glucose. The...
SEEK ID: https://fairdomhub.org/data_files/1495
- Amino acid degradation in Sulfolobus solfataricus P2
- Comparison of Sulfolobus solfataricus P2 grown on caseinhydrolysate and D-glucose
- RNA sequencing: Casaminoacids vs D-glc
- Proteome analysis: Casaminoacids versus D-Glc
- Proteomics_Casaminoacids vs Glucose_Phenyx search output
- Proteomics_Casaminoacids vs Glucose_results
- Raw MS data Casaminoacids vs glucose - Main Zip archive
- Raw MS data Casaminoacids vs glucose - Supplementary file 1
- Raw MS data Casaminoacids vs Glucose - Supplementary file 2
- Raw MS data Casaminoacids vs Glucose - Supplementary file 3
- Integrated summary of transcriptomics and proteomics results
- SULFOSYSbiotech_Proteome analysis
- Metabolome analysis: Casaminoacids versus D-Glc
- Metabolic modelling of S. solfataricus during growth on casaminoacids
- Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus
- Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus
- Comparison of Sulfolobus solfataricus P2 grown on caseinhydrolysate and D-glucose
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Created: 21st Oct 2016 at 16:48
Last updated: 5th Jun 2017 at 21:11

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Version 1 (earliest) Created 21st Oct 2016 at 16:48 by Helge Stark
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Related items
Projects: SulfoSys, SulfoSys - Biotec
Institutions: University of Sheffield
Projects: SulfoSys - Biotec
Institutions: University of Braunschweig
Projects: SulfoSys, SulfoSys - Biotec
Institutions: University of Sheffield
I am the foundation Professor of Systems Biology and Engineering within the Department of Chemical and Process Engineering (CPE), at The University of Sheffield. My research philosophy is centred on a mechanistic systems biology approach to solve biochemical reaction engineered processes. I wish to pursue issues involved in the effective utilisation of biological resources. The approach is specifically targeted at the conjunction of chemical engineering (metabolic engineering and synthetic biology), ...
e:Bio - Innovations Competition Systems Biology
Projects: SulfoSys - Biotec, SBEpo - Systems Biology of Erythropoietin
Web page: http://www.fona.de/en/14276
Within the e:Bio - Innovationswettbewerb Systembiologie (Federal Ministry of Education and Research (BMBF)), the SulfoSYSBIOTECH consortium (10 partners), aim to unravel the complexity and regulation of the carbon metabolic network of the thermoacidophilic archaeon Sulfolobus solfataricus (optimal growth at 80°C and pH 3) in order to provide new catalysts ‘extremozymes’ for utilization in White Biotechnology.
Based on the available S. solfataricus genome scale metabolic model (Ulas et al., 2012) ...
Programme: e:Bio
Public web page: http://www.sulfosys.com/
Organisms: Sulfolobus solfataricus
Integrated systems biology approach including transcriptome, metabolome, proteome analyses and modelling to elucidate amino acid degradation in S. solfataricus P2.
Submitter: Jacqueline Wolf
Studies: Comparison of Sulfolobus solfataricus P2 grown on caseinhydrolysate and ...
Assays: Metabolic modelling of S. solfataricus during growth on casaminoacids, Metabolome analysis: Casaminoacids versus D-Glc, Proteome analysis: Casaminoacids versus D-Glc, RNA sequencing: Casaminoacids vs D-glc
Snapshots: No snapshots
To investigate amino acid degradation pathways in Sulfolobus solfataricus transcriptome, proteome and metabolome analyses were performed on cells grown on caseinhydrolysate as carbon source. Cells grown with glucose served as reference condition. Metabolic modelling was used to compare the efficiency of different degradation routes.
Submitter: Jacqueline Wolf
Investigation: Amino acid degradation in Sulfolobus solfataric...
Assays: Metabolic modelling of S. solfataricus during growth on casaminoacids, Metabolome analysis: Casaminoacids versus D-Glc, Proteome analysis: Casaminoacids versus D-Glc, RNA sequencing: Casaminoacids vs D-glc
Snapshots: No snapshots
Submitter: Jacqueline Wolf
Assay type: Proteomics
Technology type: Tandem Mass Spectrometry
Investigation: Amino acid degradation in Sulfolobus solfataric...
Organisms: Sulfolobus solfataricus
SOPs: SULFOSYSbiotech_Proteome analysis
Data files: Integrated summary of transcriptomics and prote..., Proteomics_Casaminoacids vs Glucose_Phenyx sear..., Proteomics_Casaminoacids vs Glucose_results, Raw MS data Casaminoacids vs Glucose - Suppleme..., Raw MS data Casaminoacids vs Glucose - Suppleme..., Raw MS data Casaminoacids vs glucose - Main Zi..., Raw MS data Casaminoacids vs glucose - Suppleme...
Snapshots: No snapshots