Conversion Script for Model Building from KEGG-Reactome Data to SBTOOLBOX2 Version 1
- automated integration of transcriptomic and reactome data to differential equations
- structure of the paths is maintained
- continuous fermentation model in standard format for data integration, two component model (cell and fermenter)
call >> Kegg2SBToolbox2('model_map.txt', 'reactions_compounds_final.csv','extracellular.txt','testmodel.txt') for an example
where model_map is the desired mapping of species, reaction_compounds_final.csv is the entire network, extracellular.txt is a manual mapping which compounds are in extracellular-space, testmodel.txt is the output model
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Created: 11th Dec 2012 at 11:43
Last updated: 11th Dec 2012 at 13:39
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Version 1 (earliest) Created 11th Dec 2012 at 11:43 by Sebastian Curth
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Automated model building using Taverna workflows from KEGG-Database
Conversion from KEGG Reactome Information to SBTOOLBOX2 format.
Submitter: Sebastian Curth
Investigation: Modular Model Building
Assays: Example for model derivation from KEGG, Integration of data into the model
Submitter: Sebastian Curth
Biological problem addressed: Model Analysis Type
Investigation: Modular Model Building
Study: Automated Model Building
