Conversion Script for Model Building from KEGG-Reactome Data to SBTOOLBOX2
Version 1

- automated integration of transcriptomic and reactome data to differential equations
- structure of the paths is maintained
- continuous fermentation model in standard format for data integration, two component model (cell and fermenter)

call >> Kegg2SBToolbox2('model_map.txt', 'reactions_compounds_final.csv','extracellular.txt','testmodel.txt') for an example

model_map is the desired mapping of species,
reaction_compounds_final.csv is the entire network,
extracellular.txt is a manual mapping which compounds are in extracellular-space,
testmodel.txt is the output model

help Creators and Submitter

Views: 2346   Downloads: 0

Created: 11th Dec 2012 at 12:43

Last updated: 11th Dec 2012 at 14:39

Last used: 15th Apr 2021 at 21:43

help Attributions


Related items

Powered by
Copyright © 2008 - 2020 The University of Manchester and HITS gGmbH