Conversion Script for Model Building from KEGG-Reactome Data to SBTOOLBOX2
Version 1

  • automated integration of transcriptomic and reactome data to differential equations
  • structure of the paths is maintained
  • continuous fermentation model in standard format for data integration, two component model (cell and fermenter)

call >> Kegg2SBToolbox2('model_map.txt', 'reactions_compounds_final.csv','extracellular.txt','testmodel.txt') for an example

where model_map is the desired mapping of species, reaction_compounds_final.csv is the entire network, extracellular.txt is a manual mapping which compounds are in extracellular-space, testmodel.txt is the output model

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Created: 11th Dec 2012 at 12:43

Last updated: 11th Dec 2012 at 14:39

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Version 1 (earliest) Created 11th Dec 2012 at 12:43 by Sebastian Curth

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