MDL-250424BAC-1
samples-publish_VB-CC_MDL.xlsx
Figure 2.zip
https://datadryad.org/downloads/file_stream/3783747
Vadim Backman
https://fairdomhub.org/sops/829
AlphaFold Modeling
AlphaFold PDB directory has structural models of chromatin enzymes obtained from alphafold. Calculate Rg Enzymes.py is a python script that generates Enzyme sites.xlsx, and SR-EV Domain Penetration Results.nb models enzyme penetration into chromatin domains as a function of size (Rg) using a physical simulation (SR-EV = Stochastic Returning Excluded Volume model)
Movie S4: In silico polymer-based chromatin model showing compaction (CN 0–12)
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Created: 24th Apr 2025 at 18:07
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Projects: Hi-IMPAcTB, MIT SRP, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC)
Institutions: Massachusetts Institute of Technology
Projects: MIT SRP, Hi-IMPAcTB, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC)
Web page: https://nextseek.mit.edu/
Submitter: Charles Demurjian
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Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
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