samples-publish_VB-CC_D.IMG.xlsx
SMLM_HeLa_DSMO
https://datadryad.org/downloads/file_stream/3783751
Figure_5.zip/Figure 5/Figure 5 SMLM/dmso
Dryad
https://doi.org/10.5061/dryad.b8gtht7p0
Vadim Backman
https://fairdomhub.org/sops/827
CEL-250422BAC-3
Not specified
Single-molecule localization microscopy (SMLM)
H3K9me3, H3K27ac, RNA Polymerase II, H3K27me3
Single-Molecule Localization Microscopy (SMLM)
Not specified
ThunderSTORM plugin for ImageJ / FIJI

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Created: 24th Apr 2025 at 17:49

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Projects: Hi-IMPAcTB, MIT SRP, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC)
Institutions: Massachusetts Institute of Technology
Projects: MIT SRP, Hi-IMPAcTB, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC)
Web page: https://nextseek.mit.edu/
Submitter: Charles Demurjian
Studies: Chromatin conformation, gene transcription, and nucleosome remodeling as..., Impact of fibrinogen, fibrin thrombi and thrombin on cancer cell extrava..., Patient-specific vascularized tumor model: Blocking monocyte recruitment..., Personalized Vascularized Models of Breast Cancer Desmoplasia Reveal Bio..., Polyploidy of MDA-MB-231 cells drives increased extravasation with enhan..., Utilizing convolutional neural networks for discriminating cancer and st...
Assays: All Metadata, All Metadata, All Metadata, Cancer Cell Extravasation Analysis - Data Linked, Cancer Cell Extravasation Analysis - Data Linked, Cell Culture - Metadata, Cell Culture - Metadata, Cell Culture Imaging - Data Linked, Cell Culture Imaging Analysis - Data Linked, Cell Culture and Tumor Spheroid Creation - Metadata, Cell Culture and Tumor Spheroid Creation - Metadata, Cell Imaging - Data Linked, Chromatin Sequencing Analysis - Data Linked, Clot Modeling Analysis - Data Linked, Convolutional Neural Network - Data Linked, Device Creation - Metadata, Device Creation - Metadata, Device Imaging - Data Linked, Device Imaging - Data Linked, Device Imaging - Data Linked, Device Imaging - Metadata, Flow Cytometry - Data Linked, Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked, Flow Cytometry Analysis - Data Linked, Fluorescence-Activated Cell Sorting - Data Linked, Gene Expression Analysis - Data Linked, Imaging Analysis - Data Attached, Imaging Analysis - Data Linked, Library Creation - Metadata, Library Prep - Metadata, Microfluidic Device Creation - Metadata, Microfluidic Device Creation - Metadata, Microfluidic Device Imaging - Data Linked, Microvascular Network Formation - Metadata, Migration Assay Analysis - Data Linked, Modeling - Data Linked, Permeability Analysis - Data Linked, RNA Extraction - Metadata, Real-time RT-PCR - Data Linked, Short Read Sequencing - Data Linked, Short Read Sequencing - Data Linked, Tumoroid Formation - Metadata
Snapshots: No snapshots
Luay M Almassalha 1 2, Marcelo Carignano 2 3, Emily Pujadas Liwag 2 4, Wing Shun Li 2 3 5, Ruyi Gong 2 3, Nicolas Acosta 2 3, Cody L Dunton 2 3, Paola Carrillo Gonzalez 2 3, Lucas M Carter 2 4, Rivaan Kakkaramadam 2 4, Martin Kröger 6, Kyle L MacQuarrie 7 8, Jane Frederick 2 3, I Chae Ye 2 3, Patrick Su 2 3, Tiffany Kuo 2 4, Karla I Medina 2 4, Josh A Pritchard 2 3, Andrew Skol 7, Rikkert Nap 2 3, Masato Kanemaki 9 10 11, Vinayak Dravid 5 12 13 14 15, Igal Szleifer 2 3 12, Vadim Backman 2 3 ...
Submitter: Charles Demurjian
Investigation: MetNet
Assays: All Metadata, Cell Culture - Metadata, Cell Imaging - Data Linked, Chromatin Sequencing Analysis - Data Linked, Imaging Analysis - Data Linked, Library Creation - Metadata, Modeling - Data Linked, Short Read Sequencing - Data Linked
Snapshots: Snapshot 1
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.BAC-250422-V1_ChromatinElectronMicroscopy_Chr..., P.BAC-250422-V1_PWS_ChromatinConformation.docx, P.BAC-250422-V1_SMLM_ChromatinConformation.docx
Data files: samples-publish_VB-CC_CEL.xlsx, samples-publish_VB-CC_D.IMG.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.BAC-250422-V1_ChromatinElectronMicroscopy_Chr..., P.BAC-250422-V1_PWS_ChromatinConformation.docx, P.BAC-250422-V1_SMLM_ChromatinConformation.docx
Data files: samples-publish_VB-CC_A.IMG.xlsx, samples-publish_VB-CC_D.IMG.xlsx
Snapshots: No snapshots
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Chromatin conformation, gene transcription, and...
Assays: Cell Imaging - Data Linked, Imaging Analysis - Data Linked