samples-publish2024-03-05-D.IMG.xlsx
position02_01.oib
OOC-240227KAM-1
https://omero.mit.edu/webclient/img_detail/17161/?dataset=1153
Huu Tuan Nguyen
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Created: 5th Mar 2024 at 19:15
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Projects: Hi-IMPAcTB, MIT SRP, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC)
Institutions: Massachusetts Institute of Technology
Programme: Metastasis Network
Public web page: Not specified
Organisms: Not specified
Submitter: Charles Demurjian
Studies: Impact of fibrinogen, fibrin thrombi and thrombin on cancer cell extrava..., Patient-specific vascularized tumor model: Blocking monocyte recruitment..., Personalized Vascularized Models of Breast Cancer Desmoplasia Reveal Bio..., Utilizing convolutional neural networks for discriminating cancer and st...
Assays: All Metadata, Cancer Cell Extravasation Analysis - Data Linked, Cell Culture and Tumor Spheroid Creation - Metadata, Cell Culture and Tumor Spheroid Creation - Metadata, Clot Modeling Analysis - Data Linked, Convolutional Neural Network - Data Linked, Device Creation - Metadata, Device Creation - Metadata, Device Imaging - Data Linked, Device Imaging - Data Linked, Device Imaging - Data Linked, Device Imaging - Metadata, Flow Cytometry - Data Linked, Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked, Flow Cytometry Analysis - Data Linked, Imaging Analysis - Data Attached, Microfluidic Device Creation - Metadata, Microfluidic Device Creation - Metadata, Migration Assay Analysis - Data Linked, Permeability Analysis - Data Linked, Tumoroid Formation - Metadata
Snapshots: No snapshots
Huu Tuan Nguyen, Nicholas Pietraszek, Sarah E. Shelton, Kwabena Arthur, Roger D. Kamm
Link to Paper:
Abstract: Significance: Accurate cell segmentation and classification in 3 dimensional (3D) images are vital for studying live cell behavior and drug responses in 3D tissue culture. Evaluating diverse cell populations in 3D cell culture over time necessitates non-toxic staining methods, as specific fluorescence tags may not be suitable and immunofluorescence ...
Submitter: Charles Demurjian
Investigation: MetNet
Assays: Cell Culture and Tumor Spheroid Creation - Metadata, Convolutional Neural Network - Data Linked, Device Creation - Metadata, Device Imaging - Data Linked
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240227-V1_Image-Aquisiton-CNN.docx;
Data files: samples-publish2024-03-05-D.IMG.xlsx, samples-publish2024-03-05-OOC.xlsx and 1 hidden item
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MetNet
Organisms: No organisms
SOPs: P.KAM-240227-V1_Neural-Network-CNN.docx, P.KAM-240227-V1_Single-Cell-Segmentation-Analys...
Data files: samples-publish2024-03-05-D.IMG.xlsx, samples-publish2024-03-05-M.CNN.xlsx
Snapshots: No snapshots
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MetNet
Studies: Utilizing convolutional neural networks for dis...
Assays: Convolutional Neural Network - Data Linked, Device Imaging - Data Linked