Data files

List of identified peptides using spectral counts (Proteome Discoverer) for selected MOA proteomics pool identifiers.

Differentially expressed proteins between various comparison groups (Sheet: comparisons), with log2-fold changes and Benjamini-Hochberg FDR corrected p-values given for spectral count (Proteome Discoverer) quantified proteins.

Concentrations of seven different plant hormones (ABA, GA3, OPDA, JA, IAA and SA) as determined by gas chromatography coupled with mass spectrometry (GC-MS) for MOA samples.

Significant changes for a set of hormones between treatment-genotype groups as determined by ANOVA followed by LSD post hoc analysis (FDR < 0.05) using the Agricolae R package.

File describing the phenotypic observations taken on potato plants, namely spot necroses, vein necroses, chlorotic spots, yellowing and mechanicam damage.

Measurements of photosynthetic activity, namely net photosynthesis (Pn), stomatal conductance (Cond), actual photochemical efficiency (Fv’/Fm’), potential photochemical activity (Fv/Fm), chlorophyll content (SPAD) and electron transport rate (ETR).

Statistical analysis of measurements of photosynthetic parameters.

qPCR measured values of Potato virus Y (PVY).

Table connecting MOA Investigation sample ID's and GEO sample identifiers.

QC filtered and RSN normalised values for all MOA samples with microarray measurements.

Differential expression of genes between various comparison groups (Sheet: comparisons), with log2-fold changes and Benjamini-Hochberg FDR corrected p-values given.

Validation of microarray results by RT-qPCR. RT-qPCR measurements for eight genes: biologically relevant for photosynthesis chlorophyll a-b binding protein (CAB, CAB_NEW) and RuBisCO activase (RA); for defense response three classes of β-1,3-glucanases (Glu-I, Glu-II, Glu-III) and pathogenesis-related protein1b (PR-1b); and for sugar metabolism granule bound starch synthase I (GBSSI) and cell wall invertase (INV).

RT-qPCR assays for microarray validation described using the MIQE standard.

Table connecting MOA sample identifiers to GEO identifiers related to sRNAomics dataset.

miRNAs and their counts identified in the MOA samples for sRNA-Seq.

miRNAs and their RPM normalised counts identified in the MOA samples for sRNA-Seq.

Differential expression of miRNAs between various comparison groups (Sheet: comparisons), with log2-fold changes and Benjamini-Hochberg FDR corrected p-values given.

How to connect to the FAIRDOM SEEK with the collection of their APIs.