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1651 Data files visible to you, out of a total of 1747

/output/annot_stCuSTr-D_cds_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 22nd Mar 2020 at 23:15, Last updated: 12th Apr 2020 at 11:28

/output/annot_stCuSTr-D_aa_representatives.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 22nd Mar 2020 at 23:15, Last updated: 12th Apr 2020 at 11:27

/output/annot_stCuSTr-D_aa_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 22nd Mar 2020 at 23:15, Last updated: 12th Apr 2020 at 11:27

/scripts/annotate.sh

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 23rd Mar 2020 at 10:29, Last updated: 12th Apr 2020 at 11:17

/reports/SupplementaryTableS8

_p_stRT

Supplementary Table S8 - Read count summary for Désirée drought samples mapped to the representative Phureja DM and Désirée reference transcriptomes. Layer _p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping/reports/

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3722.2

Investigations: _I_STRT

Studies: SupplementaryInformation, _S_04_stPanTr

Assays: Supplementary Information, _A_07_Desiree-mapping

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Created: 8th Apr 2020 at 16:30, Last updated: 12th Apr 2020 at 10:28

/output/PGSC_drought123/DM_Aligned.sortedByCoord.out.counts

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 12th Apr 2020 at 09:51

/output/Desiree_drought123/Desiree_Aligned.sortedByCoord.out.counts

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 12th Apr 2020 at 09:49, Last updated: 12th Apr 2020 at 09:50

/output/rep.cds.IDs

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_components_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_03_components_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:55, Last updated: 12th Apr 2020 at 09:32

/output/rep.aa.IDs

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_components_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_03_components_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:55, Last updated: 12th Apr 2020 at 09:31

/output/alt.cds.IDs

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_components_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_03_components_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:55, Last updated: 12th Apr 2020 at 09:30

/output/alt.aa.IDs

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_components_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_03_components_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:55, Last updated: 12th Apr 2020 at 09:30

/scripts/commands-components_1_3cvs-gffmerged.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_components_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_03_components_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:56, Last updated: 12th Apr 2020 at 09:28

/reports/SupplementaryFigure4.pdf

_p_stRT

Supplementary Figure 3 - Venn diagrams showing the overlap of paralogue clusters in cultivar-specific transcriptomes and merged Phureja DM gene model. Representatives and alternatives of the stPanTr (pan-transcriptome) paralogue cluster are counted as well as alternatives defined at stCuSTr (cultivar-specific transcriptome) step. For Phureja, the merged ITAG and PGSC DM gene models were counted. Layer _p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged/reports/

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3409.2

Investigations: _I_STRT

Studies: SupplementaryInformation, _S_04_stPanTr

Assays: Supplementary Information, _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:01, Last updated: 11th Apr 2020 at 23:22

/reports/SupplementaryTableS7

_p_stRT

Supplementary Table S7 - Paralogue cluster information for cultivar-specific and pantranscriptome sequences extended with annotations and quality classification. Layer _p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged/reports/

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3721.2

Investigations: _I_STRT

Studies: SupplementaryInformation, _S_04_stPanTr

Assays: Supplementary Information, _A_02_cdhit_3cvs-GFFmerged

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Created: 8th Apr 2020 at 16:27, Last updated: 11th Apr 2020 at 23:22

/output/VennDiagrams/stPanTr+stCuSTr_geneCount_weak-components.tiff

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:53, Last updated: 11th Apr 2020 at 22:32

/output/VennDiagrams/stPanTr_geneCount_weak-components_repOnly.tiff

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:53, Last updated: 11th Apr 2020 at 22:32

/output/VennDiagrams/stPanTr_geneCount_weak-components_rep+alt_perc.tiff

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:53, Last updated: 11th Apr 2020 at 22:31

/output/VennDiagrams/stPanTr_geneCount_weak-components_rep+alt_and_stCuSTr_alt_perc.tiff

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:53, Last updated: 11th Apr 2020 at 22:30

/output/VennDiagrams/stPanTr_geneCount_weak-components_rep+alt_and_stCuSTr_alt.tiff

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:53, Last updated: 11th Apr 2020 at 22:30

/output/VennDiagrams/stPanTr_geneCount_weak-components_rep+alt.tiff

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:53, Last updated: 11th Apr 2020 at 22:29

/output/VennDiagrams/stPanTr_geneCount_weak-components_rep_perc.tiff

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:52, Last updated: 11th Apr 2020 at 22:29

/output/VennDiagrams/stPanTr_geneCount_weak-components_rep.tiff

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:52, Last updated: 11th Apr 2020 at 22:28

/output/VennDiagrams/stPanTr_geneCount_weak-components.tiff

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:52, Last updated: 11th Apr 2020 at 22:27

/output/stPanTr-clusters.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:24

/output/cdhit-est_singletons_aS.75_c.90.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:50, Last updated: 11th Apr 2020 at 22:23

/output/cdhit-est_representativesMatched_aS.75_c.90.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:50, Last updated: 11th Apr 2020 at 22:23

/output/cdhit-est_rep-alt_aS.75_c.90_pairs.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:50, Last updated: 11th Apr 2020 at 22:22

/output/annot.alias.cds.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:50, Last updated: 11th Apr 2020 at 22:20

/output/annot.alias.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:50, Last updated: 11th Apr 2020 at 22:19

/output/5cv_weak-components_withAnnotation.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:50, Last updated: 11th Apr 2020 at 22:18

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