Venkata Satagopam

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About Venkata Satagopam:

Dr. Venkata Satagopam is a Group Leader, Senior Research Scientist and Deputy Head of Bioinformatics core facility, LCSB, University of Luxembourg; Technical Coordinator (TeC) of ELIXIR-Luxembourg Node and CTO & Co-founder ITTM S.A. Luxembourg. Before joining LCSB, between 2004-2012 he worked as a Senior Bioinformatics Scientist at the EMBL, Heidelberg. Before EMBL he worked as a Bioinformatics Scientist at LION bioscience AG, Heidelberg. He is having more than 20 years of working experience in various bioinformatics fields including Data Integration and Knowledge Management; Clinical and Translational Data Curation, Harmonisation, Integration and Analysis; Dynamic Visual Analytics; Text-mining; Deep learning and advanced machine learning technologies and has published 75 publications. He obtained his PhD from Technical University Munich (TUM), Munich, Germany in the field of Bioinformatics. He is an associate editor of Frontiers in Systems Biology, co-chair of ISCB Education Committee involved in the organisation of several conferences, workshops, code/data hackathons.

SEEK ID: https://fairdomhub.org/people/1539

Location: Luxembourg

ORCID: https://orcid.org/0000-0002-6532-5880

Joined: 22nd Jan 2021

Expertise: Bioinformatics, Computational Systems Biology, Databases

Tools: Bioinformatics

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Disease Maps

The Disease Maps Project is designed as a large-scale community effort. It is a network of groups that work together in order to better understand disease mechanisms. The project exchanges best practices, share information, develop tools to make it easier for all the involved groups to achieve their goals.

Projects: COVID-19 Disease Map

Web page: https://disease-maps.org

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COVID-19 Disease Map

Here we share resources and best practices to develop a disease map for COVID-19. The project is progressing as a broad community-driven effort. We aim to establish a knowledge repository on virus-host interaction mechanisms specific to the SARS-CoV-2. The COVID-19 Disease Map is an assembly of molecular interaction diagrams established based on literature evidence.

Programme: Disease Maps

Public web page: http://doi.org/10.17881/covid19-disease-map

Organisms: Homo sapiens, Severe acute respiratory syndrome coronavirus 2

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Luxembourg Centre for Systems Biomedicine (LCSB)

Country: Luxembourg

City: Luxembourg

Web page: https://wwwde.uni.lu/lcsb

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COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.

COVID-19 Disease Map

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Abstract (Expand)

We need to effectively combine the knowledge from surging literature with complex datasets to propose mechanistic models of SARS-CoV-2 infection, improving data interpretation and predicting key targets …

Authors: M. Ostaszewski, A. Niarakis, A. Mazein, I. Kuperstein, R. Phair, A. Orta-Resendiz, V. Singh, S. S. Aghamiri, M. L. Acencio, E. Glaab, A. Ruepp, G. Fobo, C. Montrone, B. Brauner, G. Frishman, L. C. Monraz Gomez, J. Somers, M. Hoch, S. Kumar Gupta, J. Scheel, H. Borlinghaus, T. Czauderna, F. Schreiber, A. Montagud, M. Ponce de Leon, A. Funahashi, Y. Hiki, N. Hiroi, T. G. Yamada, A. Drager, A. Renz, M. Naveez, Z. Bocskei, F. Messina, D. Bornigen, L. Fergusson, M. Conti, M. Rameil, V. Nakonecnij, J. Vanhoefer, L. Schmiester, M. Wang, E. E. Ackerman, J. E. Shoemaker, J. Zucker, K. Oxford, J. Teuton, E. Kocakaya, G. Y. Summak, K. Hanspers, M. Kutmon, S. Coort, L. Eijssen, F. Ehrhart, D. A. B. Rex, D. Slenter, M. Martens, N. Pham, R. Haw, B. Jassal, L. Matthews, M. Orlic-Milacic, A. Senff Ribeiro, K. Rothfels, V. Shamovsky, R. Stephan, C. Sevilla, T. Varusai, J. M. Ravel, R. Fraser, V. Ortseifen, S. Marchesi, P. Gawron, E. Smula, L. Heirendt, V. Satagopam, G. Wu, A. Riutta, M. Golebiewski, S. Owen, C. Goble, X. Hu, R. W. Overall, D. Maier, A. Bauch, B. M. Gyori, J. A. Bachman, C. Vega, V. Groues, M. Vazquez, P. Porras, L. Licata, M. Iannuccelli, F. Sacco, A. Nesterova, A. Yuryev, A. de Waard, D. Turei, A. Luna, O. Babur, S. Soliman, A. Valdeolivas, M. Esteban-Medina, M. Pena-Chilet, K. Rian, T. Helikar, B. L. Puniya, D. Modos, A. Treveil, M. Olbei, B. De Meulder, S. Ballereau, A. Dugourd, A. Naldi, V. Noel, L. Calzone, C. Sander, E. Demir, T. Korcsmaros, T. C. Freeman, F. Auge, J. S. Beckmann, J. Hasenauer, O. Wolkenhauer, E. L. Wilighagen, A. R. Pico, C. T. Evelo, M. E. Gillespie, L. D. Stein, H. Hermjakob, P. D'Eustachio, J. Saez-Rodriguez, J. Dopazo, A. Valencia, H. Kitano, E. Barillot, C. Auffray, R. Balling, R. Schneider