output/quast/Lactococcus/report.tex

Version 1

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\begin{table}[ht]
\begin{center}
\caption{All statistics are based on contigs of size $\geq$ 200 bp, unless otherwise noted (e.g., "\# contigs ($\geq$ 0 bp)" and "Total length ($\geq$ 0 bp)" include all contigs).}
\begin{tabular}{|l*{1}{|r}|}
\hline
Assembly & spades \\ \hline
\# contigs ($\geq$ 0 bp) & 245 \\ \hline
\# contigs ($\geq$ 1000 bp) & 139 \\ \hline
\# contigs ($\geq$ 5000 bp) & 60 \\ \hline
\# contigs ($\geq$ 10000 bp) & 38 \\ \hline
\# contigs ($\geq$ 25000 bp) & 27 \\ \hline
\# contigs ($\geq$ 50000 bp) & 13 \\ \hline
Total length ($\geq$ 0 bp) & 2541749 \\ \hline
Total length ($\geq$ 1000 bp) & 2482734 \\ \hline
Total length ($\geq$ 5000 bp) & 2317176 \\ \hline
Total length ($\geq$ 10000 bp) & 2162610 \\ \hline
Total length ($\geq$ 25000 bp) & 1981093 \\ \hline
Total length ($\geq$ 50000 bp) & 1476297 \\ \hline
\# contigs & 242 \\ \hline
Largest contig & 256070 \\ \hline
Total length & 2541371 \\ \hline
GC (\%) & 34.97 \\ \hline
N50 & 69806 \\ \hline
N75 & 27770 \\ \hline
L50 & 10 \\ \hline
L75 & 25 \\ \hline
\# total reads & 182073123 \\ \hline
\# left & 91023201 \\ \hline
\# right & 91023201 \\ \hline
Mapped (\%) & 99.69 \\ \hline
Properly paired (\%) & 98.29 \\ \hline
Avg. coverage depth & 10684 \\ \hline
Coverage $\geq$ 1x (\%) & 100.0 \\ \hline
\# N's per 100 kbp & 0.00 \\ \hline
Complete BUSCO (\%) & 97.30 \\ \hline
Partial BUSCO (\%) & 0.00 \\ \hline
\# predicted genes (unique) & 952 \\ \hline
\# predicted genes ($\geq$ 0 bp) & 949 + 3 part \\ \hline
\# predicted genes ($\geq$ 300 bp) & 900 + 3 part \\ \hline
\# predicted genes ($\geq$ 1500 bp) & 346 + 0 part \\ \hline
\# predicted genes ($\geq$ 3000 bp) & 88 + 0 part \\ \hline
\# predicted rRNA genes & 7 + 0 part \\ \hline
\end{tabular}
\end{center}
\end{table}
\end{document}