output/quast/Serratia/busco_stats/short_summary_spades.txt
Version 1

Download

View content

Overview
Related items

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_06_extr_bact-assembly/

SEEK ID: https://fairdomhub.org/data_files/4804?version=1

Filename: output/quast/Serratia/busco_stats/short_summary_spades.txt

Format: Plain text document

Size: 892 Bytes

# BUSCO version is: 3.0.2 
# The lineage dataset is: bacteria_odb9 (Creation date: 2016-11-01, number of species: 3663, number of BUSCOs: 148)
# To reproduce this run: python /home/administrator/conda2/envs/spades/bin/quast.py -i /DATB/markop/CPB/quast/Serratia/quast_corrected_input/spades.fasta -o spades -l /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/busco/bacteria/ -m genome -c 30 -t /DATB/markop/CPB/quast/Serratia/busco_stats/tmp/ -sp fly --augustus_parameters ''''
#
# Summarized benchmarking in BUSCO notation for file /DATB/markop/CPB/quast/Serratia/quast_corrected_input/spades.fasta
# BUSCO was run in mode: genome

	C:99.3%[S:98.6%,D:0.7%],F:0.0%,M:0.7%,n:148

	147	Complete BUSCOs (C)
	146	Complete and single-copy BUSCOs (S)
	1	Complete and duplicated BUSCOs (D)
	0	Fragmented BUSCOs (F)
	1	Missing BUSCOs (M)
	148	Total BUSCO groups searched

Help

Tree Split Graph