output/quast/Enterococcus/quast.log

Version 1

/home/administrator/conda2/envs/spades/bin/quast.py -t 30 --glimmer --rna-finding --conserved-genes-finding ./shovill/Enterococcus/spades.fasta --min-contig 200 --pe1 ./fq/incl1353_R1.fastq --pe2 ./fq/incl1353_R2.fastq -o ../CPB_rcf_DNAseq/quast/Enterococcus

Version: 5.0.2

System information:
  OS: Linux-4.13.0-41-generic-x86_64-with-debian-stretch-sid (linux_64)
  Python version: 3.6.11
  CPUs number: 32

Started: 2021-01-23 11:59:31

Logging to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/quast.log

CWD: /DATB/markop/CPB/CPB_rcf_DNAseq
Main parameters: 
  MODE: default, threads: 30, minimum contig length: 200, minimum alignment length: 65, \
  ambiguity: one, threshold for extensive misassembly size: 1000

Contigs:
  Pre-processing...
  ./shovill/Enterococcus/spades.fasta ==> spades

2021-01-23 11:59:31
Running Reads analyzer...

NOTICE: Improper read names in /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1353_R1.fastq (forward reads)! Names should end with /1 (for forward reads) or /2 (for reverse reads) but @ST-E00318:496:HHWM5CCXY:2:1101:16741:1801 was found!
QUAST will attempt to fix read names.

NOTICE: Improper read names in /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1353_R2.fastq (reverse reads)! Names should end with /1 (for forward reads) or /2 (for reverse reads) but @ST-E00318:496:HHWM5CCXY:2:1101:16741:1801 was found!
QUAST will attempt to fix read names.
  Logging to files /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.log and /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err...
  Pre-processing reads...
  Running BWA...
/home/administrator/conda2/envs/spades/bin/bwa index -p /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/quast_corrected_input/spades.fasta \
/DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/quast_corrected_input/spades.fasta \
>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err \
2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err
/home/administrator/conda2/envs/spades/bin/bwa mem -t 15 /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/quast_corrected_input/spades.fasta \
/DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1353_R1.fastq /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1353_R2.fastq \
> spades.pe1.sam 2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err
/home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \
view -t 15 -h -S -f bam spades.pe1.sam > spades.pe1.bam 2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err
/home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \
markdup -r -t 15 --tmpdir /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats \
spades.pe1.bam spades.pe1.dedup.bam 2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err
  Done.
/home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \
view -H -S quast/Enterococcus/reads_stats/temp_output/spades.sam > quast/Enterococcus/reads_stats/spades.sam.header \
2>> quast/Enterococcus/reads_stats/reads_stats.err
  Sorting SAM-file...
/home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \
view -t 15 -h -S -f bam quast/Enterococcus/reads_stats/temp_output/spades.all.correct.sam \
> quast/Enterococcus/reads_stats/temp_output/spades.bam 2>> quast/Enterococcus/reads_stats/reads_stats.err
/home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \
flagstat -t 15 quast/Enterococcus/reads_stats/temp_output/spades.bam > quast/Enterococcus/reads_stats/spades.stat \
2>> quast/Enterococcus/reads_stats/reads_stats.err
/usr/bin/bamToBed -i quast/Enterococcus/reads_stats/temp_output/spades.bam > quast/Enterococcus/reads_stats/temp_output/spades.bed \
2>> quast/Enterococcus/reads_stats/reads_stats.err
sort -k1,1 -k2,2n quast/Enterococcus/reads_stats/temp_output/spades.bed > quast/Enterococcus/reads_stats/temp_output/spades.sorted.bed \
2>> quast/Enterococcus/reads_stats/reads_stats.err
/usr/bin/bedtools genomecov -i quast/Enterococcus/reads_stats/temp_output/spades.sorted.bed \
-g quast/Enterococcus/quast_corrected_input/spades.fasta.fai > quast/Enterococcus/reads_stats/temp_output/spades.genomecov \
2>> quast/Enterococcus/reads_stats/reads_stats.err
  Analysis is finished.
  Creating total report...
    saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_report.txt, reads_report.tsv, and reads_report.tex
Done.

2021-01-23 12:18:44
Running Basic statistics processor...
  Contig files: 
    spades
  Calculating N50 and L50...
    spades, N50 = 41366, L50 = 21, Total length = 3329701, GC % = 42.93, # N's per 100 kbp =  0.00
  Drawing Nx plot...
    saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/Nx_plot.pdf
  Drawing cumulative plot...
    saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/cumulative_plot.pdf
  Drawing GC content plot...
    saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/GC_content_plot.pdf
  Drawing spades GC content plot...
    saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/spades_GC_content_plot.pdf
  Drawing Coverage histogram (bin size: 1x)...
    saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/coverage_histogram.pdf
  Drawing spades coverage histogram (bin size: 1x)...
    saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/spades_coverage_histogram.pdf
Done.

2021-01-23 12:18:46
Running GlimmerHMM...
  spades
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/0.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/0.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/1.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/1.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/2.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/2.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/3.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/3.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/4.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/4.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/5.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/5.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/6.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/6.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/7.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/7.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/8.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/8.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/9.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/9.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/10.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/10.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/11.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/11.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/12.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/12.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/13.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/13.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/14.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/14.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/15.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/15.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/16.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/16.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/17.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/17.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/18.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/18.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/19.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/19.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/20.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/20.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/21.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/21.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/22.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/22.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/23.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/23.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/24.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/24.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/25.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/25.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/26.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/26.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/27.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/27.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/28.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/28.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/29.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/29.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/30.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/30.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/31.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/31.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/32.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/32.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/33.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/33.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/34.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/34.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/35.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/35.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/36.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/36.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/37.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/37.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/38.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/38.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/39.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/39.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/40.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/40.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/41.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/41.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/42.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/42.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/43.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/43.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/44.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/44.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/45.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/45.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/46.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/46.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/47.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/47.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/48.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/48.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/49.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/49.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/50.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/50.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/51.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/51.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/52.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/52.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/53.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/53.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/54.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/54.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/55.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/55.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/56.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/56.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/57.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/57.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/58.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/58.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/59.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/59.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/60.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/60.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/61.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/61.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/62.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/62.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/63.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/63.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/64.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/64.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/65.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/65.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/66.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/66.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/67.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/67.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/68.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/68.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/69.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/69.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/70.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/70.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/71.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/71.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/72.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/72.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/73.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/73.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/74.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/74.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/75.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/75.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/76.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/76.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/77.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/77.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/78.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/78.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/79.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/79.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/80.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/80.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/81.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/81.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/82.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/82.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/83.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/83.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/84.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/84.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/85.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/85.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/86.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/86.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/87.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/87.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/88.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/88.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/89.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/89.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/90.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/90.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/91.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/91.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/92.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/92.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/93.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/93.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/94.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/94.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/95.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/95.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/96.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/96.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/97.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/97.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/98.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/98.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/99.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/99.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/100.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/100.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/101.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/101.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/102.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/102.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/103.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/103.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/104.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/104.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/105.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/105.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/106.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/106.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/107.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/107.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/108.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/108.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/109.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/109.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/110.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/110.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/111.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/111.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/112.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/112.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/113.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/113.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/114.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/114.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/115.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/115.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/116.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/116.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/117.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/117.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/118.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/118.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/119.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/119.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/120.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/120.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/121.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/121.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/122.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/122.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/123.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/123.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/124.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/124.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/125.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/125.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/126.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/126.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/127.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/127.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/128.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/128.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/129.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/129.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/130.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/130.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/131.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/131.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/132.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/132.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/133.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/133.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/134.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/134.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/135.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/135.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/136.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/136.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/137.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/137.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/138.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/138.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/139.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/139.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/140.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/140.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/141.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/141.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/142.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/142.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/143.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/143.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/144.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/144.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/145.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/145.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/146.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/146.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/147.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/147.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/148.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/148.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/149.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/149.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/150.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/150.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/151.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/151.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/152.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/152.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/153.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/153.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/154.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/154.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/155.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/155.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/156.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/156.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/157.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/157.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/158.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/158.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/159.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/159.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/160.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/160.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/161.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/161.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/162.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/162.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/163.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/163.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/164.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/164.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/165.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/165.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/166.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/166.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/167.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/167.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/168.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/168.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/169.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/169.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/170.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/170.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/171.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/171.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/172.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/172.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/173.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/173.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/174.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/174.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/175.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/175.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/176.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/176.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/177.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/177.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/178.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/178.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/179.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/179.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/180.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/180.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/181.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/181.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/182.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/182.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/183.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/183.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/184.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/184.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/185.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/185.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/186.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/186.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/187.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/187.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/188.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/188.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/189.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/189.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/190.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/190.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/191.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/191.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/192.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/192.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/193.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/193.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/194.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/194.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/195.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/195.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/196.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/196.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/197.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/197.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/198.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/198.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/199.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/199.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/200.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/200.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/201.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/201.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/202.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/202.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/203.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/203.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/204.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/204.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/205.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/205.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/206.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/206.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/207.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/207.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/208.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/208.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/209.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/209.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/210.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/210.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/211.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/211.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/212.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/212.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/213.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/213.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/214.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/214.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/215.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/215.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/216.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/216.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/217.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/217.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/218.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/218.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/219.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/219.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/220.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/220.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/221.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/221.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/222.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/222.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/223.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/223.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/224.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/224.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/225.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/225.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/226.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/226.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/227.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/227.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/228.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/228.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/229.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/229.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/230.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/230.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/231.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/231.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/232.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/232.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/233.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/233.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/234.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/234.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/235.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/235.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/236.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/236.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/237.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/237.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/238.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/238.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/239.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/239.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/240.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/240.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/241.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/241.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/242.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/242.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/243.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/243.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/244.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/244.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/245.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/245.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/246.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/246.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/247.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/247.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/248.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/248.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/249.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/249.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/250.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/250.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/251.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/251.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/252.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/252.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/253.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/253.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/254.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/254.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/255.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/255.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/256.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/256.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/257.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/257.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/258.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/258.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/259.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/259.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/260.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/260.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/261.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/261.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/262.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/262.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/263.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/263.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/264.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/264.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/265.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/265.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/266.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/266.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/267.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/267.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/268.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/268.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/269.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/269.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/270.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/270.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/271.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/271.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/272.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/272.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/273.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/273.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/274.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/274.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/275.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/275.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/276.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/276.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/277.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/277.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/278.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/278.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/279.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/279.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/280.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/280.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/281.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/281.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/282.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/282.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/283.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/283.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/284.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/284.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/285.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/285.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/286.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/286.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/287.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/287.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/288.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/288.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/289.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/289.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/290.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/290.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/291.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/291.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/292.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/292.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/293.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/293.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/294.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/294.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/295.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/295.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/296.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/296.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/297.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/297.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/298.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/298.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/299.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/299.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/300.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/300.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/301.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/301.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/302.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/302.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/303.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/303.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/304.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/304.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/305.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/305.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/306.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/306.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/307.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/307.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/308.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/308.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/309.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/309.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/310.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/310.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/311.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/311.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/312.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/312.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/313.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/313.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/314.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/314.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/315.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/315.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/316.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/316.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/317.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/317.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/318.fasta \
    -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \
    -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/318.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \
    2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr
    Genes = 2255 unique, 2255 total
    Predicted genes (GFF): /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/predicted_genes/spades_glimmer_genes.gff.gz
Done.

2021-01-23 12:19:12
Running Barrnap...
Logging to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/predicted_genes/barrnap.log...
/home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/barrnap/bin/barrnap \
--quiet -k bac --threads 30 quast/Enterococcus/quast_corrected_input/spades.fasta \
> quast/Enterococcus/predicted_genes/spades.rna.gff 2>> quast/Enterococcus/predicted_genes/barrnap.log
    Ribosomal RNA genes = 5
    Predicted genes (GFF): /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/predicted_genes/spades.rna.gff
Done.

2021-01-23 12:19:13
Running BUSCO...
Logs and results will be saved under /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/busco_stats...
Done.

2021-01-23 12:19:48
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
  1 of 2: Creating Icarus viewers...
  2 of 2: Creating PDF with all tables and plots...
Done

2021-01-23 12:19:50
RESULTS:
  Text versions of total report are saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/report.html
  PDF version (tables and plots) is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/report.pdf
  Icarus (contig browser) is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/icarus.html
  Log is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/quast.log

Finished: 2021-01-23 12:19:50
Elapsed time: 0:20:18.843810
NOTICEs: 2; WARNINGs: 0; non-fatal ERRORs: 0

Thank you for using QUAST!