/home/administrator/conda2/envs/spades/bin/quast.py -t 30 --glimmer --rna-finding --conserved-genes-finding ./shovill/Enterococcus/spades.fasta --min-contig 200 --pe1 ./fq/incl1353_R1.fastq --pe2 ./fq/incl1353_R2.fastq -o ../CPB_rcf_DNAseq/quast/Enterococcus Version: 5.0.2 System information: OS: Linux-4.13.0-41-generic-x86_64-with-debian-stretch-sid (linux_64) Python version: 3.6.11 CPUs number: 32 Started: 2021-01-23 11:59:31 Logging to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/quast.log CWD: /DATB/markop/CPB/CPB_rcf_DNAseq Main parameters: MODE: default, threads: 30, minimum contig length: 200, minimum alignment length: 65, \ ambiguity: one, threshold for extensive misassembly size: 1000 Contigs: Pre-processing... ./shovill/Enterococcus/spades.fasta ==> spades 2021-01-23 11:59:31 Running Reads analyzer... NOTICE: Improper read names in /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1353_R1.fastq (forward reads)! Names should end with /1 (for forward reads) or /2 (for reverse reads) but @ST-E00318:496:HHWM5CCXY:2:1101:16741:1801 was found! QUAST will attempt to fix read names. NOTICE: Improper read names in /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1353_R2.fastq (reverse reads)! Names should end with /1 (for forward reads) or /2 (for reverse reads) but @ST-E00318:496:HHWM5CCXY:2:1101:16741:1801 was found! QUAST will attempt to fix read names. Logging to files /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.log and /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err... Pre-processing reads... Running BWA... /home/administrator/conda2/envs/spades/bin/bwa index -p /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/quast_corrected_input/spades.fasta \ /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/quast_corrected_input/spades.fasta \ >> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err \ 2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err /home/administrator/conda2/envs/spades/bin/bwa mem -t 15 /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/quast_corrected_input/spades.fasta \ /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1353_R1.fastq /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1353_R2.fastq \ > spades.pe1.sam 2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \ view -t 15 -h -S -f bam spades.pe1.sam > spades.pe1.bam 2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \ markdup -r -t 15 --tmpdir /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats \ spades.pe1.bam spades.pe1.dedup.bam 2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_stats.err Done. /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \ view -H -S quast/Enterococcus/reads_stats/temp_output/spades.sam > quast/Enterococcus/reads_stats/spades.sam.header \ 2>> quast/Enterococcus/reads_stats/reads_stats.err Sorting SAM-file... /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \ view -t 15 -h -S -f bam quast/Enterococcus/reads_stats/temp_output/spades.all.correct.sam \ > quast/Enterococcus/reads_stats/temp_output/spades.bam 2>> quast/Enterococcus/reads_stats/reads_stats.err /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \ flagstat -t 15 quast/Enterococcus/reads_stats/temp_output/spades.bam > quast/Enterococcus/reads_stats/spades.stat \ 2>> quast/Enterococcus/reads_stats/reads_stats.err /usr/bin/bamToBed -i quast/Enterococcus/reads_stats/temp_output/spades.bam > quast/Enterococcus/reads_stats/temp_output/spades.bed \ 2>> quast/Enterococcus/reads_stats/reads_stats.err sort -k1,1 -k2,2n quast/Enterococcus/reads_stats/temp_output/spades.bed > quast/Enterococcus/reads_stats/temp_output/spades.sorted.bed \ 2>> quast/Enterococcus/reads_stats/reads_stats.err /usr/bin/bedtools genomecov -i quast/Enterococcus/reads_stats/temp_output/spades.sorted.bed \ -g quast/Enterococcus/quast_corrected_input/spades.fasta.fai > quast/Enterococcus/reads_stats/temp_output/spades.genomecov \ 2>> quast/Enterococcus/reads_stats/reads_stats.err Analysis is finished. Creating total report... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/reads_stats/reads_report.txt, reads_report.tsv, and reads_report.tex Done. 2021-01-23 12:18:44 Running Basic statistics processor... Contig files: spades Calculating N50 and L50... spades, N50 = 41366, L50 = 21, Total length = 3329701, GC % = 42.93, # N's per 100 kbp = 0.00 Drawing Nx plot... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/Nx_plot.pdf Drawing cumulative plot... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/cumulative_plot.pdf Drawing GC content plot... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/GC_content_plot.pdf Drawing spades GC content plot... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/spades_GC_content_plot.pdf Drawing Coverage histogram (bin size: 1x)... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/coverage_histogram.pdf Drawing spades coverage histogram (bin size: 1x)... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/basic_stats/spades_coverage_histogram.pdf Done. 2021-01-23 12:18:46 Running GlimmerHMM... spades /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/0.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/0.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/1.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/1.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/2.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/2.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/3.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/3.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/4.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/4.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/5.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/5.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/6.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/6.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/7.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/7.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/8.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/8.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/9.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/9.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/10.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/10.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/11.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/11.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/12.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/12.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/13.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/13.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/14.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/14.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/15.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/15.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/16.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/16.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/17.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/17.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/18.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/18.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/19.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/19.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/20.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/20.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/21.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/21.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/22.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/22.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/23.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/23.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/24.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/24.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/25.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/25.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/26.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/26.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/27.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/27.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/28.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/28.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/29.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/29.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/30.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/30.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/31.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/31.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/32.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/32.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/33.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/33.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/34.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/34.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/35.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/35.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/36.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/36.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/37.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/37.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/38.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/38.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/39.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/39.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/40.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/40.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/41.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/41.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/42.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/42.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/43.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/43.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/44.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/44.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/45.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/45.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/46.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/46.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/47.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/47.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/48.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/48.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/49.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/49.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/50.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/50.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/51.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/51.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/52.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/52.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/53.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/53.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/54.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/54.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/55.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/55.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/56.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/56.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/57.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/57.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/58.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/58.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/59.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/59.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/60.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/60.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/61.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/61.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/62.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/62.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/63.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/63.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/64.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/64.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/65.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/65.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/66.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/66.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/67.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/67.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/68.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/68.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/69.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/69.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/70.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/70.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/71.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/71.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/72.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/72.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/73.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/73.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/74.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/74.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/75.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/75.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/76.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/76.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/77.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/77.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/78.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/78.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/79.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/79.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/80.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/80.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/81.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/81.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/82.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/82.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/83.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/83.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/84.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/84.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/85.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/85.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/86.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/86.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/87.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/87.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/88.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/88.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/89.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/89.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/90.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/90.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/91.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/91.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/92.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/92.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/93.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/93.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/94.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/94.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/95.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/95.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/96.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/96.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/97.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/97.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/98.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/98.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/99.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/99.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/100.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/100.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/101.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/101.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/102.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/102.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/103.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/103.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/104.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/104.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/105.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/105.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/106.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/106.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/107.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/107.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/108.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/108.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/109.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/109.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/110.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/110.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/111.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/111.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/112.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/112.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/113.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/113.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/114.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/114.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/115.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/115.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/116.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/116.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/117.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/117.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/118.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/118.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/119.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/119.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/120.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/120.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/121.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/121.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/122.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/122.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/123.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/123.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/124.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/124.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/125.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/125.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/126.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/126.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/127.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/127.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/128.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/128.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/129.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/129.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/130.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/130.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/131.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/131.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/132.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/132.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/133.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/133.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/134.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/134.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/135.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/135.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/136.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/136.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/137.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/137.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/138.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/138.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/139.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/139.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/140.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/140.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/141.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/141.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/142.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/142.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/143.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/143.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/144.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/144.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/145.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/145.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/146.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/146.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/147.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/147.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/148.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/148.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/149.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/149.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/150.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/150.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/151.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/151.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/152.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/152.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/153.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/153.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/154.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/154.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/155.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/155.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/156.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/156.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/157.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/157.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/158.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/158.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/159.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/159.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/160.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/160.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/161.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/161.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/162.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/162.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/163.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/163.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/164.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/164.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/165.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/165.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/166.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/166.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/167.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/167.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/168.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/168.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/169.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/169.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/170.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/170.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/171.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/171.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/172.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/172.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/173.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/173.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/174.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/174.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/175.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/175.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/176.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/176.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/177.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/177.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/178.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/178.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/179.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/179.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/180.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/180.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/181.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/181.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/182.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/182.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/183.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/183.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/184.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/184.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/185.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/185.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/186.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/186.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/187.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/187.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/188.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/188.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/189.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/189.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/190.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/190.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/191.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/191.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/192.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/192.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/193.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/193.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/194.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/194.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/195.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/195.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/196.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/196.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/197.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/197.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/198.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/198.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/199.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/199.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/200.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/200.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/201.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/201.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/202.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/202.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/203.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/203.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/204.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/204.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/205.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/205.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/206.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/206.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/207.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/207.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/208.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/208.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/209.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/209.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/210.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/210.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/211.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/211.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/212.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/212.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/213.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/213.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/214.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/214.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/215.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/215.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/216.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/216.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/217.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/217.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/218.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/218.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/219.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/219.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/220.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/220.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/221.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/221.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/222.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/222.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/223.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/223.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/224.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/224.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/225.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/225.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/226.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/226.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/227.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/227.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/228.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/228.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/229.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/229.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/230.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/230.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/231.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/231.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/232.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/232.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/233.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/233.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/234.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/234.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/235.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/235.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/236.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/236.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/237.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/237.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/238.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/238.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/239.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/239.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/240.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/240.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/241.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/241.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/242.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/242.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/243.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/243.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/244.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/244.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/245.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/245.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/246.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/246.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/247.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/247.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/248.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/248.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/249.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/249.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/250.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/250.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/251.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/251.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/252.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/252.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/253.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/253.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/254.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/254.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/255.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/255.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/256.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/256.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/257.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/257.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/258.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/258.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/259.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/259.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/260.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/260.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/261.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/261.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/262.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/262.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/263.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/263.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/264.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/264.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/265.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/265.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/266.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/266.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/267.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/267.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/268.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/268.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/269.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/269.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/270.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/270.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/271.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/271.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/272.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/272.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/273.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/273.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/274.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/274.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/275.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/275.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/276.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/276.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/277.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/277.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/278.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/278.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/279.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/279.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/280.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/280.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/281.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/281.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/282.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/282.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/283.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/283.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/284.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/284.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/285.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/285.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/286.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/286.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/287.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/287.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/288.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/288.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/289.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/289.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/290.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/290.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/291.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/291.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/292.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/292.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/293.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/293.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/294.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/294.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/295.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/295.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/296.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/296.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/297.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/297.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/298.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/298.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/299.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/299.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/300.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/300.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/301.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/301.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/302.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/302.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/303.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/303.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/304.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/304.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/305.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/305.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/306.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/306.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/307.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/307.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/308.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/308.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/309.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/309.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/310.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/310.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/311.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/311.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/312.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/312.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/313.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/313.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/314.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/314.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/315.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/315.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/316.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/316.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/317.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/317.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/318.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Enterococcus/predicted_genes/tmp/tmpmrmggcyx/318.gff >> quast/Enterococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Enterococcus/predicted_genes/spades_glimmer.stderr Genes = 2255 unique, 2255 total Predicted genes (GFF): /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/predicted_genes/spades_glimmer_genes.gff.gz Done. 2021-01-23 12:19:12 Running Barrnap... Logging to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/predicted_genes/barrnap.log... /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/barrnap/bin/barrnap \ --quiet -k bac --threads 30 quast/Enterococcus/quast_corrected_input/spades.fasta \ > quast/Enterococcus/predicted_genes/spades.rna.gff 2>> quast/Enterococcus/predicted_genes/barrnap.log Ribosomal RNA genes = 5 Predicted genes (GFF): /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/predicted_genes/spades.rna.gff Done. 2021-01-23 12:19:13 Running BUSCO... Logs and results will be saved under /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/busco_stats... Done. 2021-01-23 12:19:48 Creating large visual summaries... This may take a while: press Ctrl-C to skip this step.. 1 of 2: Creating Icarus viewers... 2 of 2: Creating PDF with all tables and plots... Done 2021-01-23 12:19:50 RESULTS: Text versions of total report are saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/report.txt, report.tsv, and report.tex Text versions of transposed total report are saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/transposed_report.txt, transposed_report.tsv, and transposed_report.tex HTML version (interactive tables and plots) is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/report.html PDF version (tables and plots) is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/report.pdf Icarus (contig browser) is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/icarus.html Log is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Enterococcus/quast.log Finished: 2021-01-23 12:19:50 Elapsed time: 0:20:18.843810 NOTICEs: 2; WARNINGs: 0; non-fatal ERRORs: 0 Thank you for using QUAST!