Data files

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3432 Data files visible to you, out of a total of 5652
/intermediate/singletons.DM.seqID.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/input/StPGSC4.04n_seq_4_PGSC-p-rep_ITAG-pep_gff-2019-04-23.fasta

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/input/Solanum_tuberosum_PGSC_DM_v4.04_converterWithDescriptions.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/input/Solanum_tuberosum_ITAG_DM_v1_descriptions_v2.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/input/path_to_files.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/scripts/tab_to_fasta.py

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/scripts/GC_content.py

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/output/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gff-2019-04-23.GC_len.tsv

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/output/Solanum_tuberosum_PGSC_merged.CDS_GC.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/output/Solanum_tuberosum-ITAG_DM_v1_cds_GC.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/input/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gff-2019-04-23.fasta

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/input/Solanum_tuberosum_PGSC_merged.fasta

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/input/Solanum_tuberosum-ITAG_DM_v1_cds.fasta

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Top100 transcripts

This file contains the top 100 transcripts for the identified cell types in the integrated dataset.

Creator: Anne-Marie Galow

Submitter: Anne-Marie Galow

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/output/Rywal_tr.cds.tsv.gz

Supplementary Table S5 Rywal biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Rywal.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3112.1

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/output/Desiree_tr.cds.tsv.gz

Supplementary Table S3 Désirée biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Désirée.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3110.1

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/output/PW363_tr.cds.tsv.gz

Supplementary Table S4 PW363 biological evidence filtering results. Output of 1st filtering step by biological evidence for breeding clone PW363.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3111.1

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HepG2_protein_cell_0mM_6mMGlc
No description specified

Creator: Jurgen Haanstra

Submitter: Jurgen Haanstra

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HepG2 | cell counts and metabolite levels over time at 0, 6 or 22 mM glucose
No description specified

Creator: Jurgen Haanstra

Submitter: Jurgen Haanstra

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Cell counts and metbolites for HepG2 cells with or without SSZ inhibition
No description specified

Creator: Jurgen Haanstra

Submitter: Jurgen Haanstra

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Nuclei characteristics for the single nuclei analysis of Fzt:DU and BL6 mice

File contains the detailed cluster names for each data set, number of nuclei per cluster, average reads per nucleus, and average reads per cluster.

Creator: Markus Wolfien

Submitter: Markus Wolfien

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Rawdata RNAseq

Umbrella study for all RNAseq rawdata Separate projects can be accessed under "component projects"

Creator: Malte Herold

Submitter: Malte Herold

External Link
RT-PCR Excel Template

An example of a JERM-compliant template for RT-PCR data

This template was taken from the GEO website (http://www.ncbi.nlm.nih.gov/geo/info/spreadsheet.html) and modified to conform to the SysMO-JERM (Just enough Results Model) for transcriptomics.

Creator: Katy Wolstencroft

Submitter: Katy Wolstencroft

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Proteomics Template (empty) from PRIDE

An example of a blank data sheet for Mass spectrometry data. This is not SysMO specific, but it is an example of MIAPE compliant data.

The shreadsheet contains macros to help you annotate your data with terms from controlled vocabularies and ontologies

Creator: Katy Wolstencroft

Submitter: Katy Wolstencroft

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Excel sheet template : concentrations of intracellular metabolites

Excel sheet template : concentrations of intracellular metabolites

Creators: Olga Krebs, Katy Wolstencroft

Submitter: Olga Krebs

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Metabolomics Master Excel Template

This Excel template is the general (master) template for any type of metabolomics data. It can be used as it is, or extended and modified to create a more specific templates for particular technologies and assay types.

Creators: Katy Wolstencroft, Olga Krebs

Submitter: Katy Wolstencroft

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PSICQUIC registry

The causal interactions service provides the extracted data of causality from Reactome database.

Creator: Vasundra Toure

Submitter: Vasundra Toure

External Link
Top marker genes per nuclei

This dot-plot represents only the most significant genes per identified cell type cluster.

Creators: Markus Wolfien, Anne-Marie Galow

Submitter: Markus Wolfien

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Top 100 marker genes for whole heart fzt:DU cell types

This file contains the top markers for the identified cell types.

Creators: Markus Wolfien, Anne-Marie Galow

Submitter: Markus Wolfien

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Top 10 marker genes per nuclei

This pdf contains the top 10 markers for each identified cell type as a dot-plot.

Creators: Markus Wolfien, Anne-Marie Galow

Submitter: Markus Wolfien

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