ExploreAn example of a completed data sheet for Mass spectrometry data. This is not SysMO specific, but it is an example of a MIAPE compliant data format taken from the PRIDE website (http://www.ebi.ac.uk/pride).
SEEK ID: https://fairdomhub.org/data_files/9?version=1
Filename:
PRIDE_template_example.xls
Format: Spreadsheet
Size: 2.85 MB
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Created: 26th Oct 2009 at 15:48
Last updated: 14th Nov 2012 at 11:57
Last used: 7th Jul 2022 at 02:52
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Version 1 Created 26th Oct 2009 at 15:48 by Katy Wolstencroft
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Projects: SysMO DB, HUMET Startup, FAIRDOM, Consensus Hallmark Annotation
Institutions: University of Leiden
https://orcid.org/0000-0002-1279-5133
I am an Assistant Professor at Leiden University in the Leiden Institute of Advanced Computer Science. I am a bioinformatician and my research interests are in data integration. I use scientific workflows and semantic web technologies to integrate and analyse data in systems biology and functional genomics.
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- facilitates and maximises the potential for data exchange between SysMO research groups;
- maximises the ‘shelf life’ and ...
Programme: SysMO
Public web page: http://www.sysmo-db.org/
Data integration is an essential part of Systems Biology. Scientists need to combine different sources of information in order to model biological systems, and relate those models to available experimental data for validation. Currently, only a small fraction of the data and models produced during Systems Biology investigations are deposited for reuse by the community, and only a smaller fraction of that data is standards compliant, semantic content. By embedding semantic technologies into familiar ...
Submitter: Olga Krebs
Studies: Creating Templates for Proteomics, Creating Templates for Transcriptomics, Creating template for metabolomics data
Assays: Affy Transcriptomics Templates, Chip-chip Excel Template, General Transcriptomics Templates, Metabolomics Master Template, NimbleGen Transcriptomics Templates, Proteomics Template (gel electrophoresis), Proteomics Templates (Mass spectrometry), RT-PCR Excel Template, Standard-based Excel template for metabolomics data
Here you will find guidelines for creating MIAPE compliant proteomics data files as well as examples and links to online tools and resources
Submitter: Katy Wolstencroft
Investigation: Creating data sheet template for 'omics data
Assays: Proteomics Template (gel electrophoresis), Proteomics Templates (Mass spectrometry)
Some examples of proteomics templates for Mass Spectrometry data that conform to the MIAPE specification
Submitter: Katy Wolstencroft
Assay type: Proteomics
Technology type: Mass Spectrometry
Investigation: Creating data sheet template for 'omics data
