output/pyPheno_v12/byPheno_v12_1_Data-pval.csv Version 1
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP1012-finalG/_A_04_MapManBINenrich-GSEA/
SEEK ID: https://fairdomhub.org/data_files/5324?version=1
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output/pyPheno_v12/byPheno_v12_1_Data-pval.csv
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NAME SIZE pr_vs_wt-up NAME SIZE pr_vs_wt-down 1.1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II.LHC-II 35 0.0 1.1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM II.PSII POLYPEPTIDE SUBUNITS 60 0.0 1.1.2.1 PS.LIGHTREACTION.PHOTOSYSTEM I.LHC-I 29 0.0 1.1.2.2 PS.LIGHTREACTION.PHOTOSYSTEM I.PSI POLYPEPTIDE SUBUNITS 34 0.0 1.2.6 PS.PHOTORESPIRATION.HYDROXYPYRUVATE REDUCTASE 15 0.7402299 1.3.6 PS.CALVIN CYCLE.ALDOLASE 20 0.03160271 1.3.13 PS.CALVIN CYCLE.RUBISCO INTERACTING 23 0.0 2.1.2.2 MAJOR CHO METABOLISM.SYNTHESIS.STARCH.STARCH SYNTHASE 17 0.17872341 2.2.2.1.2 MAJOR CHO METABOLISM.DEGRADATION.STARCH.STARCH CLEAVAGE.BETA AMYLASE 16 0.077617325 3.5 MINOR CHO METABOLISM.OTHERS 49 0.5620915 3.6 MINOR CHO METABOLISM.CALLOSE 16 0.2693727 9.1.2 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.NADH-DH.LOCALISATION NOT CLEAR 38 0.015306123 9.9 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.F1-ATPASE 32 0.677643 10.2 CELL WALL.CELLULOSE SYNTHESIS 20 0.0022624435 10.2.1 CELL WALL.CELLULOSE SYNTHESIS.CELLULOSE SYNTHASE 25 0.1199095 10.5.1.1 CELL WALL.CELL WALL PROTEINS.AGPS.AGP 20 0.0 10.6.1 CELL WALL.DEGRADATION.CELLULASES AND BETA -1,4-GLUCANASES 16 0.032941177 10.6.2 CELL WALL.DEGRADATION.MANNAN-XYLOSE-ARABINOSE-FUCOSE 19 0.0036231885 10.6.3 CELL WALL.DEGRADATION.PECTATE LYASES AND POLYGALACTURONASES 44 0.007792208 10.7 CELL WALL.MODIFICATION 46 0.1952862 10.8.1 CELL WALL.PECTIN*ESTERASES.PME 27 0.0072115385 11.1.8 LIPID METABOLISM.FA SYNTHESIS AND FA ELONGATION.ACYL COA LIGASE 21 0.040747028 11.3 LIPID METABOLISM.PHOSPHOLIPID SYNTHESIS 15 0.0021231424 11.6 LIPID METABOLISM.LIPID TRANSFER PROTEINS ETC 21 0.41323793 11.8 LIPID METABOLISM.EXOTICS(STEROIDS, SQUALENE ETC) 16 0.07400722 11.8.1 LIPID METABOLISM.EXOTICS (STEROIDS, SQUALENE ETC).SPHINGOLIPIDS 37 0.23114355 11.9.2 LIPID METABOLISM.LIPID DEGRADATION.LIPASES 17 0.5316742 11.9.2.1 LIPID METABOLISM.LIPID DEGRADATION.LIPASES.TRIACYLGLYCEROL LIPASE 26 0.017574692 11.9.3 LIPID METABOLISM.LIPID DEGRADATION.LYSOPHOSPHOLIPASES 15 0.097297296 11.9.3.2 LIPID METABOLISM.LIPID DEGRADATION.LYSOPHOSPHOLIPASES.CARBOXYLESTERASE 19 0.0034722222 11.9.4.3 LIPID METABOLISM.LIPID DEGRADATION.BETA-OXIDATION.ENOYL COA HYDRATASE 15 0.935305 11.9.4.5 LIPID METABOLISM.LIPID DEGRADATION.BETA-OXIDATION.ACYL-COA THIOESTERASE 17 0.02909091 13.1.3.4 AMINO ACID METABOLISM.SYNTHESIS.ASPARTATE FAMILY.METHIONINE 27 0.0021929825 13.2.6.3 AMINO ACID METABOLISM.DEGRADATION.AROMATIC AA.TRYPTOPHAN 18 0.06521739 15.2 METAL HANDLING.BINDING, CHELATION AND STORAGE 48 0.74319726 16.2 SECONDARY METABOLISM.PHENYLPROPANOIDS 20 0.011029412 16.7 SECONDARY METABOLISM.WAX 20 0.18018018 16.8.3 SECONDARY METABOLISM.FLAVONOIDS.DIHYDROFLAVONOLS 18 0.12 16.8.3.3 SECONDARY METABOLISM.FLAVONOIDS.DIHYDROFLAVONOLS.FLAVONOID 3-MONOOXYGENASE 15 0.0017953322 17.1.2 HORMONE METABOLISM.ABSCISIC ACID.SIGNAL TRANSDUCTION 22 0.0 17.1.3 HORMONE METABOLISM.ABSCISIC ACID.INDUCED-REGULATED-RESPONSIVE-ACTIVATED 22 0.0 17.2.2 HORMONE METABOLISM.AUXIN.SIGNAL TRANSDUCTION 38 0.6672535 17.2.3 HORMONE METABOLISM.AUXIN.INDUCED-REGULATED-RESPONSIVE-ACTIVATED 69 0.41898528 17.5.1 HORMONE METABOLISM.ETHYLENE.SYNTHESIS-DEGRADATION 23 0.636528 17.5.2 HORMONE METABOLISM.ETHYLENE.SIGNAL TRANSDUCTION 38 0.0 17.5.3 HORMONE METABOLISM.ETHYLENE.INDUCED-REGULATED-RESPONSIVE-ACTIVATED 21 0.108156025 17.8.1 HORMONE METABOLISM.SALICYLIC ACID.SYNTHESIS-DEGRADATION 16 0.3738938 18 CO-FACTOR AND VITAMINE METABOLISM 23 0.08788598 20.1 STRESS.BIOTIC 158 0.0 20.1.7 STRESS.BIOTIC.PR-PROTEINS 75 0.057660624 20.2 STRESS.ABIOTIC 37 0.29381442 20.2.1 STRESS.ABIOTIC.HEAT 247 0.46164772 20.2.2 STRESS.ABIOTIC.COLD 24 0.005119454 20.2.3 STRESS.ABIOTIC.DROUGHT/SALT 86 0.37096775 20.2.4 STRESS.ABIOTIC.TOUCH/WOUNDING 16 0.010544815 20.2.5 STRESS.ABIOTIC.LIGHT 16 0.11479029 20.2.99 STRESS.ABIOTIC.UNSPECIFIED 51 0.26003212 21.1 REDOX.THIOREDOXIN 79 0.5013477 21.1.1 REDOX.THIOREDOXIN.PDIL 17 0.84132844 21.2 REDOX.ASCORBATE AND GLUTATHIONE 47 0.08250825 21.2.1 REDOX.ASCORBATE AND GLUTATHIONE.ASCORBATE 27 0.53674835 21.2.2 REDOX.ASCORBATE AND GLUTATHIONE.GLUTATHIONE 18 0.378119 21.4 REDOX.GLUTAREDOXINS 17 0.6268116 21.6 REDOX.DISMUTASES AND CATALASES 20 0.58690745 23.2 NUCLEOTIDE METABOLISM.DEGRADATION 33 0.55932206 23.3.3 NUCLEOTIDE METABOLISM.SALVAGE.NUDIX HYDROLASES 22 0.12943262 26.1 MISC.MISC2 37 0.340388 26.2 MISC.UDP GLUCOSYL AND GLUCORONYL TRANSFERASES 162 0.16998468 26.3 MISC.GLUCO-, GALACTO- AND MANNOSIDASES 35 0.6137566 26.3.2 MISC.GLUCO-, GALACTO- AND MANNOSIDASES.BETA-GALACTOSIDASE 15 0.93808633 26.4 MISC.BETA 1,3 GLUCAN HYDROLASES 18 0.15828678 26.4.1 MISC.BETA 1,3 GLUCAN HYDROLASES.GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 33 0.6830467 26.6 MISC.O-METHYL TRANSFERASES 17 0.41136363 26.7 MISC.OXIDASES - COPPER, FLAVONE ETC 83 0.06584992 26.8 MISC.NITRILASES, *NITRILE LYASES, BERBERINE BRIDGE ENZYMES, RETICULINE OXIDASES, TROPONINE REDUCTASES 36 0.70454544 26.9 MISC.GLUTATHIONE S TRANSFERASES 34 0.0 26.10 MISC.CYTOCHROME P450 91 0.0 26.12 MISC.PEROXIDASES 25 0.0 26.13 MISC.ACID AND OTHER PHOSPHATASES 58 0.017361112 26.16 MISC.MYROSINASES-LECTIN-JACALIN 15 0.27915195 26.19 MISC.PLASTOCYANIN-LIKE 18 0.005328597 26.21 MISC.PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN (LTP) FAMILY PROTEIN 38 0.0 26.22 MISC.SHORT CHAIN DEHYDROGENASE/REDUCTASE (SDR) 36 0.053511705 26.24 MISC.GCN5-RELATED N-ACETYLTRANSFERASE 22 0.35740072 26.28 MISC.GDSL-MOTIF LIPASE 32 0.0 27.1 RNA.PROCESSING 154 0.0 27.1.1 RNA.PROCESSING.SPLICING 112 1.0 27.1.2 RNA.PROCESSING.RNA HELICASE 56 0.034912717 27.1.19 RNA.PROCESSING.RIBONUCLEASES 55 0.9250646 27.2 RNA.TRANSCRIPTION 123 1.0 27.3 RNA.REGULATION OF TRANSCRIPTION 24 0.99769056 27.3.3 RNA.REGULATION OF TRANSCRIPTION.AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY 47 0.0 27.3.4 RNA.REGULATION OF TRANSCRIPTION.ARF, AUXIN RESPONSE FACTOR FAMILY 28 0.01703163 27.3.6 RNA.REGULATION OF TRANSCRIPTION.BHLH,BASIC HELIX-LOOP-HELIX FAMILY 93 0.13085622 27.3.7 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) CO-LIKE, CONSTANS-LIKE ZINC FINGER FAMILY 30 0.18944845 27.3.8 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) DOF ZINC FINGER FAMILY 23 0.0 27.3.9 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) GATA TRANSCRIPTION FACTOR FAMILY 29 0.74300253 27.3.11 RNA.REGULATION OF TRANSCRIPTION.C2H2 ZINC FINGER FAMILY 69 0.18276763 27.3.12 RNA.REGULATION OF TRANSCRIPTION.C3H ZINC FINGER FAMILY 33 0.22857143 27.3.20 RNA.REGULATION OF TRANSCRIPTION.G2-LIKE TRANSCRIPTION FACTOR FAMILY, GARP 36 0.08067227 27.3.22 RNA.REGULATION OF TRANSCRIPTION.HB,HOMEOBOX TRANSCRIPTION FACTOR FAMILY 79 0.0 27.3.23 RNA.REGULATION OF TRANSCRIPTION.HSF,HEAT-SHOCK TRANSCRIPTION FACTOR FAMILY 23 0.1559633 27.3.25 RNA.REGULATION OF TRANSCRIPTION.MYB DOMAIN TRANSCRIPTION FACTOR FAMILY 67 0.10987261 27.3.26 RNA.REGULATION OF TRANSCRIPTION.MYB-RELATED TRANSCRIPTION FACTOR FAMILY 47 0.4862543 27.3.29 RNA.REGULATION OF TRANSCRIPTION.TCP TRANSCRIPTION FACTOR FAMILY 27 0.095 27.3.30 RNA.REGULATION OF TRANSCRIPTION.TRIHELIX, TRIPLE-HELIX TRANSCRIPTION FACTOR FAMILY 37 0.839527 27.3.32 RNA.REGULATION OF TRANSCRIPTION.WRKY DOMAIN TRANSCRIPTION FACTOR FAMILY 50 0.0 27.3.34 RNA.REGULATION OF TRANSCRIPTION.ORPHAN FAMILY 17 0.0022883294 27.3.35 RNA.REGULATION OF TRANSCRIPTION.BZIP TRANSCRIPTION FACTOR FAMILY 86 0.0 27.3.40 RNA.REGULATION OF TRANSCRIPTION.AUX/IAA FAMILY 20 0.079822615 27.3.44 RNA.REGULATION OF TRANSCRIPTION.CHROMATIN REMODELING FACTORS 57 0.97077924 27.3.50 RNA.REGULATION OF TRANSCRIPTION.GENERAL TRANSCRIPTION 29 0.050458714 27.3.52 RNA.REGULATION OF TRANSCRIPTION.GLOBAL TRANSCRIPTION FACTOR GROUP 32 0.9981818 27.3.54 RNA.REGULATION OF TRANSCRIPTION.HISTONE ACETYLTRANSFERASES 20 0.75586855 27.3.55 RNA.REGULATION OF TRANSCRIPTION.HDA 24 0.99822694 27.3.59 RNA.REGULATION OF TRANSCRIPTION.METHYL BINDING DOMAIN PROTEINS 18 0.6992754 27.3.63 RNA.REGULATION OF TRANSCRIPTION.PHD FINGER TRANSCRIPTION FACTOR 25 0.8679245 27.3.67 RNA.REGULATION OF TRANSCRIPTION.PUTATIVE TRANSCRIPTION REGULATOR 227 0.9423347 27.3.69 RNA.REGULATION OF TRANSCRIPTION.SET-DOMAIN TRANSCRIPTIONAL REGULATOR FAMILY 37 0.10880829 27.3.71 RNA.REGULATION OF TRANSCRIPTION.SNF7 19 0.0 27.3.85 RNA.REGULATION OF TRANSCRIPTION.SIGMA LIKE PLANT 15 0.035634745 27.3.99 RNA.REGULATION OF TRANSCRIPTION.UNCLASSIFIED 392 0.8305785 27.4 RNA.RNA BINDING 311 0.97407407 28.1 DNA.SYNTHESIS/CHROMATIN STRUCTURE 249 0.01 28.1.3.2.1 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H2A 38 0.010025063 28.1.3.2.2 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H2B 17 0.056818184 28.1.3.2.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H3 18 0.039911307 28.1.3.2.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H4 20 0.002444988 28.2 DNA.REPAIR 74 0.1764706 28.99 DNA.UNSPECIFIED 176 0.56832296 29.1.30 PROTEIN.AA ACTIVATION.PSEUDOURIDYLATE SYNTHASE 15 0.09544469 29.2.2 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS 16 0.42857143 29.2.2.1 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.EXPORT FROM NUCLEUS 17 0.18545455 29.2.2.3.1 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS.SNORNPS 21 0.0022123894 29.2.2.3.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS.METHYLOTRANSFERASES 15 0.1477516 29.2.2.3.5 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS.DEXD-BOX HELICASES 19 0.08528785 29.2.3 PROTEIN.SYNTHESIS.INITIATION 147 1.0 29.2.4 PROTEIN.SYNTHESIS.ELONGATION 71 0.0 29.2.5 PROTEIN.SYNTHESIS.RELEASE 16 0.16008772 29.3.1 PROTEIN.TARGETING.NUCLEUS 73 1.0 29.3.2 PROTEIN.TARGETING.MITOCHONDRIA 37 0.9316038 29.3.3 PROTEIN.TARGETING.CHLOROPLAST 59 0.0 29.3.4.1 PROTEIN.TARGETING.SECRETORY PATHWAY.ER 25 0.09878683 29.3.4.2 PROTEIN.TARGETING.SECRETORY PATHWAY.GOLGI 21 0.7818182 29.3.4.3 PROTEIN.TARGETING.SECRETORY PATHWAY.VACUOLE 48 0.0 29.3.4.99 PROTEIN.TARGETING.SECRETORY PATHWAY.UNSPECIFIED 128 0.01217656 29.3.5 PROTEIN.TARGETING.PEROXISOMES 19 0.94813275 29.4.1 PROTEIN.POSTRANSLATIONAL MODIFICATION.KINASE 54 0.119281046 29.4.1.57 PROTEIN.POSTRANSLATIONAL MODIFICATION.KINASE.RECEPTOR LIKE CYTOPLASMATIC KINASE VII 55 0.28978226 29.5 PROTEIN.DEGRADATION 199 0.58965516 29.5.1 PROTEIN.DEGRADATION.SUBTILASES 35 0.09669811 29.5.2 PROTEIN.DEGRADATION.AUTOPHAGY 24 0.0 29.5.3 PROTEIN.DEGRADATION.CYSTEINE PROTEASE 59 0.08976378 29.5.4 PROTEIN.DEGRADATION.ASPARTATE PROTEASE 41 0.14214876 29.5.5 PROTEIN.DEGRADATION.SERINE PROTEASE 90 0.91087615 29.5.7 PROTEIN.DEGRADATION.METALLOPROTEASE 52 0.25181597 29.5.9 PROTEIN.DEGRADATION.AAA TYPE 42 0.41319445 29.5.11 PROTEIN.DEGRADATION.UBIQUITIN 111 0.014128729 29.5.11.1 PROTEIN.DEGRADATION.UBIQUITIN.UBIQUITIN 43 0.008741259 29.5.11.3 PROTEIN.DEGRADATION.UBIQUITIN.E2 70 0.0 29.5.11.4.1 PROTEIN.DEGRADATION.UBIQUITIN.E3.HECT 19 0.2155477 29.5.11.4.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.RING 426 0.0 29.5.11.4.3.1 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF.SKP 21 0.023423424 29.5.11.4.3.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF.FBOX 210 0.0 29.5.11.4.5.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3.BTB/POZ 18 0.18491921 29.5.11.5 PROTEIN.DEGRADATION.UBIQUITIN.UBIQUITIN PROTEASE 39 0.525394 29.5.11.20 PROTEIN.DEGRADATION.UBIQUITIN.PROTEASOM 124 0.010385756 29.6 PROTEIN.FOLDING 122 0.0 29.7 PROTEIN.GLYCOSYLATION 40 0.7698962 29.8 PROTEIN.ASSEMBLY AND COFACTOR LIGATION 39 0.0024096386 30.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY 48 0.1785124 30.2.2 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT II 18 0.73730683 30.2.3 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT III 38 0.0 30.2.6 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT VI 16 0.2454955 30.2.10 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT X 17 0.3298791 30.2.11 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT XI 44 0.15330188 30.2.16 SIGNALLING.RECEPTOR KINASES.CATHARANTHUS ROSEUS-LIKE RLK1 23 0.4940171 30.2.17 SIGNALLING.RECEPTOR KINASES.DUF 26 52 0.0016420361 30.2.19 SIGNALLING.RECEPTOR KINASES.LEGUME-LECTIN 15 0.0036036037 30.2.20 SIGNALLING.RECEPTOR KINASES.WHEAT LRK10 LIKE 21 0.0018348624 30.2.24 SIGNALLING.RECEPTOR KINASES.S-LOCUS GLYCOPROTEIN LIKE 21 0.4177215 30.2.99 SIGNALLING.RECEPTOR KINASES.MISC 21 0.110516936 30.3 SIGNALLING.CALCIUM 282 0.3520548 30.4 SIGNALLING.PHOSPHINOSITIDES 28 0.4047619 30.4.1 SIGNALLING.PHOSPHINOSITIDES.PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 25 0.4804754 30.5 SIGNALLING.G-PROTEINS 292 0.88135594 30.6 SIGNALLING.MAP KINASES 70 0.090460524 30.7 SIGNALLING.14-3-3 PROTEINS 33 0.5248227 30.11 SIGNALLING.LIGHT 135 0.657971 30.11.1 SIGNALLING.LIGHT.COP9 SIGNALOSOME 17 0.9771529 31.1 CELL.ORGANISATION 289 0.7961956 31.1.1.1.1 CELL.ORGANISATION.CYTOSKELETON.ACTIN.ACTIN 21 0.8552036 31.1.1.2 CELL.ORGANISATION.CYTOSKELETON.MIKROTUBULI 60 0.74666667 31.2 CELL.DIVISION 121 0.97579426 31.3 CELL.CYCLE 60 0.5093834 31.3.1 CELL.CYCLE.PEPTIDYLPROLYL ISOMERASE 50 0.24598931 31.4 CELL.VESICLE TRANSPORT 235 0.047756873 33.3 DEVELOPMENT.SQUAMOSA PROMOTER BINDING LIKE (SPL) 21 0.7537594 34.1 TRANSPORT.P- AND V-ATPASES 52 1.0 34.1.1 TRANSPORT.P- AND V-ATPASES.H+-TRANSPORTING TWO-SECTOR ATPASE 24 0.6441281 34.1.1.2 TRANSPORT.P- AND V-ATPASES.H+-TRANSPORTING TWO-SECTOR ATPASE.SUBUNIT C 15 0.92152464 34.2 TRANSPORT.SUGARS 60 0.013377926 34.3 TRANSPORT.AMINO ACIDS 61 0.0 34.4 TRANSPORT.NITRATE 26 0.12829526 34.7 TRANSPORT.PHOSPHATE 16 0.018050542 34.8 TRANSPORT.METABOLITE TRANSPORTERS AT THE ENVELOPE MEMBRANE 52 0.2159383 34.9 TRANSPORT.METABOLITE TRANSPORTERS AT THE MITOCHONDRIAL MEMBRANE 77 0.21601942 34.10 TRANSPORT.NUCLEOTIDES 16 0.8580786 34.12 TRANSPORT.METAL 85 0.8320988 34.13 TRANSPORT.PEPTIDES AND OLIGOPEPTIDES 46 0.0 34.14 TRANSPORT.UNSPECIFIED CATIONS 65 0.8104575 34.15 TRANSPORT.POTASSIUM 56 0.96457326 34.16 TRANSPORT.ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS 112 0.6091603 34.18 TRANSPORT.UNSPECIFIED ANIONS 24 0.95187163 34.19.1 TRANSPORT.MAJOR INTRINSIC PROTEINS.PIP 36 0.018965518 34.19.2 TRANSPORT.MAJOR INTRINSIC PROTEINS.TIP 16 0.22839506 34.21 TRANSPORT.CALCIUM 41 0.21549636 34.22 TRANSPORT.CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS 24 0.03710575 34.99 TRANSPORT.MISC 131 0.03058104 35.1.1 NOT ASSIGNED.NO ONTOLOGY.ABC1 FAMILY PROTEIN 17 0.18930958 35.1.2 NOT ASSIGNED.NO ONTOLOGY.AGENET DOMAIN-CONTAINING PROTEIN 15 0.45045045 35.1.3 NOT ASSIGNED.NO ONTOLOGY.ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN 40 0.045608107 35.1.5 NOT ASSIGNED.NO ONTOLOGY.PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 324 0.0 35.1.12 NOT ASSIGNED.NO ONTOLOGY.PUMILIO/PUF RNA-BINDING DOMAIN-CONTAINING PROTEIN 16 0.9706499 35.1.19 NOT ASSIGNED.NO ONTOLOGY.C2 DOMAIN-CONTAINING PROTEIN 39 0.54017097 35.1.21 NOT ASSIGNED.NO ONTOLOGY.EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN 16 0.4402174 35.1.27 NOT ASSIGNED.NO ONTOLOGY.TETRATRICOPEPTIDE REPEAT (TPR) 31 0.93634844 35.1.40 NOT ASSIGNED.NO ONTOLOGY.GLYCINE RICH PROTEINS 30 0.32504147 35.1.41 NOT ASSIGNED.NO ONTOLOGY.HYDROXYPROLINE RICH PROTEINS 57 0.5698052
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Created: 11th Apr 2022 at 14:08
Last updated: 21st Sep 2022 at 10:46
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Version 1 (earliest) Created 11th Apr 2022 at 14:08 by Marko Petek
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https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Short Name: T21_SXPsysbio Title: Use a systems biology approach to identify regulatory bottlenecks in SxPv1 Description: Samples from SXPv1.0 plants as well as sister nulls (progeny from the original transgenic event in which the transgene has segregated) and wild type will be grown and leaf samples taken for RNA extraction and profiling of primary metabolites and volatiles (target pheromones as well as potential derivatives) (P1, P5). Phenotypic and GC-MS data will be obtained and analysed from ...
Submitter: Marko Petek
Studies: Investigation files, _S_P1_SPv10T0andT1, _S_P1_SPv10T2andT3, _S_P1_SPv1TransientExp, _S_P1_SxPAltAcTransferases, _S_P1_SxPv10vsSxP12, _S_P1_SxPv12T2, _S_P4_CoExpNetViz, _S_P4_DiNAR, _S_P4_GAtreat, _S_P4_SxP10-newG-DE, _S_P4_SxP10-oldG-DE, _S_P4_SxP1012-finalG, _S_P4_SxP12-newG-DE
Assays: _A_00_SxP_photos-phenotyping, _A_01_RNA1-RNAisol, _A_01_SxP_Data_Only-CoExp, _A_01_SxPv12_fastq-QC, _A_01_mapping-CLC, _A_01_toNewGenome-CLC-mapping, _A_02_FastQC-bioinfo, _A_02_Nb_datasets-CoExp, _A_02_SxPv12_mapping-CLC, _A_02_limmavoomDE-R, _A_02a_limmavoom-multim-R, _A_02a_limmavoomDEbylines-R, _A_02b_limmavoom-uniquem-R, _A_03_MapMan-visualisation, _A_03_NewGenome-MapMan, _A_03_SxPv12_limmavoom_DE-R, _A_03_mapping-CLC, _A_03a_mapping2-STAR, _A_04_GSEA-Stat, _A_04_MapManBINenrich-GSEA, _A_04_Mercator-bioinfo, _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA, _A_05_DEstat-R, _A_05_Phenotype_analysis-Stat, _A_05_VOCcomp-Bioinfo, _A_05a_DEstat2-R, _A_05b_DElow-wt-R, _A_06_MapMan-bioinfo, _A_06_SxPv1-0_Illumina-Centrifuge, _A_07_NbAUSv1-0-InterPro, _A_07_transgenes-CLC, _A_CKN-DiNAR, _A_CKN_NbL35-DiNAR, _A_LeavesSxPv10vsv12-GCMS, _A_P4_v10v12-phenotyping, _A_PIS-DiNAR, _A_PIS-SxPv12-DiNAR, _A_PIS_NbL35-DiNAR, _A_RootsSxPv10vsv12-GCMS, _A_SP10T0Analysis-GCMS, _A_SP10T1Analysis-GCMS, _A_SPv10EaDActAnalysis-GCMS, _A_SPv10T2Analysis-GCMS, _A_SPv10T3Analysis-GCMS, _A_SPv10_phenotyping-Images, _A_SxPAlternativeAcetyltransferases-GCMS, _A_SxPv10vsv12-phenotyping, _A_SxPv12ScreeningT2-GCMS, _A_TransientSPv11andSPv12-GCMS, _I_T21_SXPsysbio-files, _S_P1_SPv10T0andT1-files, _S_P1_SPv10T2andT3-files, _S_P1_SPv1TransientExp-files, _S_P1_SxPAltAcTransferases-files, _S_P1_SxPv10vsSxP12-files, _S_P1_SxPv12T2-files, _S_P4_CoExpNetViz-files, _S_P4_DiNAR-files, _S_P4_GAtreat-files, _S_P4_SxP10-newG-DE-files, _S_P4_SxP10-oldG-DE-files, _S_P4_SxP1012-finalG-files, _S_P4_SxP12-newG-DE-files
Short Name: P4_SxP1012-finalG Title: Reanalysis of SxP Illumina reads with Nb genome V3.5 Description: * Raw Data: Principal investigator: Ĺ pela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Short Name: 04_MapManBINenrich-GSEA Assay Class: DRY Assay Type: GSEA Title: GSEA for SxP Illumina mapped reads Description: GSEA of TMM normalized total counts from mapping of SxP Illumina reads to Nb genome v3.5 pISA Assay creation date: 2021-12-31 pISA Assay creator: Mojca Jutersek Phenodata: None Featuredata: Data:
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T21_SXPsysbio
Study: _S_P4_SxP1012-finalG
