scripts/LeafAreaInput.txt Version 1
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_GAtreat/
SEEK ID: https://fairdomhub.org/data_files/5056?version=1
Filename:
scripts/LeafAreaInput.txt
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Plant LeafAreaSum MaxLeafArea Line Treatment Group FreshWeight DryWeight w_c_1-1 188.733 29.061 wt C wt_C 5.85 0.742 w_c_1-2 171.832 31.077 wt C wt_C 5.75 0.753 w_c_1-3 208.062 37.042 wt C wt_C 6.47 0.765 w_c_1-4 108.727 21.982 wt C wt_C 3.76 0.451 w_c_2-1 257.25 43.784 wt C wt_C 7.9 0.899 w_c_2-2 146.887 26.444 wt C wt_C 4.92 0.563 w_c_2-3 93.448 19.703 wt C wt_C 3.23 0.386 w_c_2-4 163.152 26.005 wt C wt_C 5.19 0.603 w_1_1-1 179.672 27.309 wt 1 wt_1 6.28 0.183 w_1_1-2 116.207 26.464 wt 1 wt_1 5.18 0.378 w_1_1-3 136.865 26.627 wt 1 wt_1 4.88 0.636 w_1_1-4 128.95 25.139 wt 1 wt_1 4.01 0.651 w_1_2-1 108.255 21.072 wt 1 wt_1 NA 0.443 w_1_2-2 142.498 24.309 wt 1 wt_1 5.32 0.577 w_1_2-3 158.798 27.37 wt 1 wt_1 5.53 0.661 w_1_2-4 171.253 28.22 wt 1 wt_1 5.85 0.678 w_10_1-1 166.77 27.591 wt 10 wt_10 5.9 0.748 w_10_1-2 156.569 26.093 wt 10 wt_10 5.29 0.756 w_10_1-3 109.971 19.162 wt 10 wt_10 3.73 0.519 w_10_1-4 140.444 26.097 wt 10 wt_10 5.07 0.636 w_10_2-1 138.155 27.919 wt 10 wt_10 5.07 0.721 w_10_2-2 111.954 18.868 wt 10 wt_10 4.05 0.409 w_10_2-3 164.1 32.243 wt 10 wt_10 5.54 0.675 w_10_2-4 60.204 14.447 wt 10 wt_10 2.2 0.175 w_100_1-1 104.084 21.125 wt 100 wt_100 3.76 0.343 w_100_1-2 197.266 35.083 wt 100 wt_100 6.18 0.599 w_100_1-3 131.464 20.355 wt 100 wt_100 3.6 0.335 w_100_1-4 169.502 31.252 wt 100 wt_100 5.8 0.569 w_100_2-1 NA NA wt 100 wt_100 0.61 NA w_100_2-2 141.637 25.451 wt 100 wt_100 4.9 0.533 w_100_2-3 120.02 24.81 wt 100 wt_100 4.34 0.536 w_100_2-4 120.014 23.559 wt 100 wt_100 3.62 0.327 5.2_c_1-1 197.961 30.031 1.0_5.2.5_low C 1.0_low_C 5.82 0.772 5.2_c_1-2 189.208 29.586 1.0_5.2.5_low C 1.0_low_C 5.46 0.627 5.2_c_1-3 NA NA 1.0_5.2.5_low C 1.0_low_C NA NA 5.2_c_1-4 191.162 31.456 1.0_5.2.5_low C 1.0_low_C 5.21 0.623 5.2_c_2-1 114.381 22.2 1.0_5.2.5_low C 1.0_low_C 4.64 0.379 5.2_c_2-2 NA NA 1.0_5.2.5_low C 1.0_low_C NA NA 5.2_c_2-3 85.902 22.866 1.0_5.2.5_low C 1.0_low_C 2.71 0.301 5.2_c_2-4 56.19 11.063 1.0_5.2.5_low C 1.0_low_C 1.83 0.303 5.2_1_1-1 128.727 24.255 1.0_5.2.5_low 1 1.0_low_1 3.71 0.37 5.2_1_1-2 94.061 15.985 1.0_5.2.5_low 1 1.0_low_1 3.15 0.34 5.2_1_1-3 NA NA 1.0_5.2.5_low 1 1.0_low_1 NA NA 5.2_1_1-4 26.714 7.803 1.0_5.2.5_low 1 1.0_low_1 1.17 0.109 5.2_1_2-1 144.056 23.684 1.0_5.2.5_low 1 1.0_low_1 4.13 0.473 5.2_1_2-2 NA NA 1.0_5.2.5_low 1 1.0_low_1 NA NA 5.2_1_2-3 25.109 9.569 1.0_5.2.5_low 1 1.0_low_1 1.57 0.159 5.2_1_2-4 NA NA 1.0_5.2.5_low 1 1.0_low_1 NA NA 5.2_10_1-1 94.786 15.849 1.0_5.2.5_low 10 1.0_low_10 3.13 0.319 5.2_10_1-2 NA NA 1.0_5.2.5_low 10 1.0_low_10 NA NA 5.2_10_1-3 126.135 19.585 1.0_5.2.5_low 10 1.0_low_10 4.06 0.439 5.2_10_1-4 NA NA 1.0_5.2.5_low 10 1.0_low_10 NA NA 5.2_10_2-1 140.634 22.774 1.0_5.2.5_low 10 1.0_low_10 4.25 0.505 5.2_10_2-2 103.036 17.281 1.0_5.2.5_low 10 1.0_low_10 3.68 0.358 5.2_10_2-3 NA NA 1.0_5.2.5_low 10 1.0_low_10 NA NA 5.2_10_2-4 93.051 15.715 1.0_5.2.5_low 10 1.0_low_10 2.94 0.369 5.2_100_1-1 128.207 23.512 1.0_5.2.5_low 100 1.0_low_100 4.25 0.442 5.2_100_1-2 61.648 13.931 1.0_5.2.5_low 100 1.0_low_100 2.07 0.186 5.2_100_1-3 107.252 18.633 1.0_5.2.5_low 100 1.0_low_100 3.94 0.521 5.2_100_1-4 NA NA 1.0_5.2.5_low 100 1.0_low_100 NA NA 5.2_100_2-1 115.795 20.571 1.0_5.2.5_low 100 1.0_low_100 4.03 0.494 5.2_100_2-2 71.014 13.57 1.0_5.2.5_low 100 1.0_low_100 2.55 0.29 5.2_100_2-3 NA NA 1.0_5.2.5_low 100 1.0_low_100 NA NA 5.1_c_1-1 138.781 25.396 1.0_5.1.7_high C 1.0_high_C 4.25 0.569 5.1_c_1-2 116.093 28.15 1.0_5.1.7_high C 1.0_high_C 3.18 0.25 5.1_c_1-3 163.113 28.328 1.0_5.1.7_high C 1.0_high_C 4.47 0.609 5.1_c_1-4 200.051 36.512 1.0_5.1.7_high C 1.0_high_C 5.57 0.619 5.1_c_1-5 207.797 34.299 1.0_5.1.7_high C 1.0_high_C 5.22 0.778 5.1_c_2-1 213.289 37.747 1.0_5.1.7_high C 1.0_high_C 6.13 0.692 5.1_c_2-2 203.952 38.098 1.0_5.1.7_high C 1.0_high_C 5.8 0.831 5.1_c_2-3 197.915 33.579 1.0_5.1.7_high C 1.0_high_C 5.24 0.624 5.1_c_2-4 119.911 22.168 1.0_5.1.7_high C 1.0_high_C 3.41 0.448 5.1_1_1-1 164.979 28.254 1.0_5.1.7_high 1 1.0_high_1 5.19 0.803 5.1_1_1-2 193.816 32.056 1.0_5.1.7_high 1 1.0_high_1 6.88 0.927 5.1_1_1-3 154.858 27.653 1.0_5.1.7_high 1 1.0_high_1 4.72 0.455 5.1_1_1-4 NA NA 1.0_5.1.7_high 1 1.0_high_1 NA NA 5.1_1_1-5 74.792 17.373 1.0_5.1.7_high 1 1.0_high_1 2.19 0.157 5.1_1_2-1 162.721 32.524 1.0_5.1.7_high 1 1.0_high_1 4.98 0.546 5.1_1_2-2 188.845 33.966 1.0_5.1.7_high 1 1.0_high_1 6.2 0.234 5.1_1_2-3 160.107 34.249 1.0_5.1.7_high 1 1.0_high_1 4.68 0.227 5.1_1_2-4 166.984 31.376 1.0_5.1.7_high 1 1.0_high_1 5.34 0.415 5.1_10_1-1 156.63 25.594 1.0_5.1.7_high 10 1.0_high_10 5.14 0.424 5.1_10_1-2 131.884 24.282 1.0_5.1.7_high 10 1.0_high_10 4.51 0.266 5.1_10_1-3 130.447 21.994 1.0_5.1.7_high 10 1.0_high_10 4.23 0.285 5.1_10_1-4 83.36 11.93 1.0_5.1.7_high 10 1.0_high_10 2.6 0.243 5.1_10_1-5 148.952 27.575 1.0_5.1.7_high 10 1.0_high_10 4.9 0.561 5.1_10_2-1 148.609 28.007 1.0_5.1.7_high 10 1.0_high_10 5.06 0.568 5.1_10_2-2 155.387 26.002 1.0_5.1.7_high 10 1.0_high_10 4.69 0.536 5.1_10_2-3 162.474 27.258 1.0_5.1.7_high 10 1.0_high_10 5.27 0.616 5.1_10_2-4 157.084 27.431 1.0_5.1.7_high 10 1.0_high_10 4.7 0.571 5.1_100_1-1 188.321 32.964 1.0_5.1.7_high 100 1.0_high_100 6.18 0.743 5.1_100_1-2 142.919 25.131 1.0_5.1.7_high 100 1.0_high_100 4.27 0.471 5.1_100_1-3 116.128 21.357 1.0_5.1.7_high 100 1.0_high_100 4.31 0.45 5.1_100_1-4 NA NA 1.0_5.1.7_high 100 1.0_high_100 NA NA 5.1_100_1-5 NA NA 1.0_5.1.7_high 100 1.0_high_100 NA NA 5.1_100_2-1 117.531 19.481 1.0_5.1.7_high 100 1.0_high_100 3.9 0.409 5.1_100_2-2 150.252 25.137 1.0_5.1.7_high 100 1.0_high_100 5.22 0.546 5.1_100_2-3 181.221 29.781 1.0_5.1.7_high 100 1.0_high_100 5.93 0.578 5.1_100_2-4 146.185 23.55 1.0_5.1.7_high 100 1.0_high_100 5.15 0.558 4.1_c_1-1 215.317 41.567 1.2_4.1 C 1.2_4.1_C 7.53 0.973 4.1_c_1-2 190.309 31.495 1.2_4.1 C 1.2_4.1_C 6.02 0.716 4.1_c_1-3 227.629 38.599 1.2_4.1 C 1.2_4.1_C 6.92 0.323 4.1_c_1-4 200.287 36.473 1.2_4.1 C 1.2_4.1_C 7.17 0.818 4.1_c_1-5 223.534 36.005 1.2_4.1 C 1.2_4.1_C 7.22 0.913 4.1_c_1-6 218.805 37.191 1.2_4.1 C 1.2_4.1_C 6.81 0.861 4.1_c_2-1 167.319 26.715 1.2_4.1 C 1.2_4.1_C 5.91 0.665 4.1_c_2-2 194.52 34.528 1.2_4.1 C 1.2_4.1_C 6.03 0.738 4.1_c_2-3 207.088 32.318 1.2_4.1 C 1.2_4.1_C 6.52 0.737 4.1_c_2-4 239.977 43.512 1.2_4.1 C 1.2_4.1_C 7.25 0.874 4.1_c_2-5 200.706 34.371 1.2_4.1 C 1.2_4.1_C 6.63 0.803 4.1_1_1-1 NA NA 1.2_4.1 1 1.2_4.1_1 NA NA 4.1_1_1-2 192.284 33.715 1.2_4.1 1 1.2_4.1_1 6.91 0.774 4.1_1_1-3 208.373 36.189 1.2_4.1 1 1.2_4.1_1 7.96 1.082 4.1_1_1-4 160.44 23.548 1.2_4.1 1 1.2_4.1_1 5.77 0.579 4.1_1_1-5 105.519 27.142 1.2_4.1 1 1.2_4.1_1 3.54 0.282 4.1_1_2-1 NA NA 1.2_4.1 1 1.2_4.1_1 NA NA 4.1_1_2-2 206.948 33.965 1.2_4.1 1 1.2_4.1_1 7.43 0.685 4.1_1_2-3 182.351 32.841 1.2_4.1 1 1.2_4.1_1 6.37 0.736 4.1_1_2-4 103.178 25.099 1.2_4.1 1 1.2_4.1_1 4.14 0.546 4.1_1_2-5 218.148 37.415 1.2_4.1 1 1.2_4.1_1 7.82 1.009 4.1_10_1-1 183.114 34.546 1.2_4.1 10 1.2_4.1_10 6.81 0.625 4.1_10_1-2 235.004 34.644 1.2_4.1 10 1.2_4.1_10 7.9 0.764 4.1_10_1-3 203.704 31.776 1.2_4.1 10 1.2_4.1_10 7.15 0.551 4.1_10_1-4 193.164 30.264 1.2_4.1 10 1.2_4.1_10 6.47 0.433 4.1_10_1-5 195.99 30.367 1.2_4.1 10 1.2_4.1_10 6.8 0.58 4.1_10_2-1 225.114 38.18 1.2_4.1 10 1.2_4.1_10 7.69 0.717 4.1_10_2-2 166.421 29.094 1.2_4.1 10 1.2_4.1_10 6.97 0.618 4.1_10_2-3 202.376 32.202 1.2_4.1 10 1.2_4.1_10 7.22 0.678 4.1_10_2-4 147.779 26.877 1.2_4.1 10 1.2_4.1_10 5.34 0.456 4.1_10_2-5 130.58 29.757 1.2_4.1 10 1.2_4.1_10 5.08 0.501 4.1_100_1-1 220.778 36.392 1.2_4.1 100 1.2_4.1_100 8.64 0.932 4.1_100_1-2 219.943 31.669 1.2_4.1 100 1.2_4.1_100 7.91 0.814 4.1_100_1-3 NA NA 1.2_4.1 100 1.2_4.1_100 1.89 0.126 4.1_100_1-4 226.431 41.404 1.2_4.1 100 1.2_4.1_100 7.46 0.796 4.1_100_1-5 173.322 30.898 1.2_4.1 100 1.2_4.1_100 6.74 0.775 4.1_100_2-1 187.501 28.581 1.2_4.1 100 1.2_4.1_100 7.45 0.828 4.1_100_2-2 253.276 35.896 1.2_4.1 100 1.2_4.1_100 8.28 0.833 4.1_100_2-3 172.648 29.282 1.2_4.1 100 1.2_4.1_100 6.32 0.608 4.1_100_2-4 166.623 30.62 1.2_4.1 100 1.2_4.1_100 6.23 0.636 4.1_100_2-5 162.707 22.696 1.2_4.1 100 1.2_4.1_100 5.5 0.675 4.3_c_1-1 179.566 36.556 1.2_4.3 C 1.2_4.3_C 6.22 0.534 4.3_c_1-2 258.286 39.328 1.2_4.3 C 1.2_4.3_C 8.05 0.859 4.3_c_1-3 193.99 36.243 1.2_4.3 C 1.2_4.3_C 6.35 0.708 4.3_c_1-4 74.239 16.886 1.2_4.3 C 1.2_4.3_C 2.67 0.257 4.3_c_2-1 121.593 20.889 1.2_4.3 C 1.2_4.3_C 4 0.378 4.3_c_2-2 154.524 26.599 1.2_4.3 C 1.2_4.3_C 5 0.517 4.3_c_2-3 115.508 22.675 1.2_4.3 C 1.2_4.3_C 3.66 0.359 4.3_1_1-1 147.865 23.685 1.2_4.3 1 1.2_4.3_1 4.83 0.498 4.3_1_1-2 127.45 24.365 1.2_4.3 1 1.2_4.3_1 5 0.548 4.3_1_1-3 130.235 24.933 1.2_4.3 1 1.2_4.3_1 4.75 0.5 4.3_1_1-4 152.142 25.176 1.2_4.3 1 1.2_4.3_1 5.18 0.59 4.3_1_2-1 108.577 22.46 1.2_4.3 1 1.2_4.3_1 4.02 0.426 4.3_1_2-2 143.427 25.911 1.2_4.3 1 1.2_4.3_1 5.32 0.584 4.3_1_2-3 158.374 30.278 1.2_4.3 1 1.2_4.3_1 5.3 0.526 4.3_10_1-1 196.17 32.03 1.2_4.3 10 1.2_4.3_10 6.46 0.725 4.3_10_1-2 143.348 24.179 1.2_4.3 10 1.2_4.3_10 4.92 0.463 4.3_10_1-3 123.01 23.085 1.2_4.3 10 1.2_4.3_10 4.15 0.358 4.3_10_1-4 165.929 27.584 1.2_4.3 10 1.2_4.3_10 6.18 0.686 4.3_10_2-1 91.587 22.447 1.2_4.3 10 1.2_4.3_10 3.59 0.333 4.3_10_2-2 NA NA 1.2_4.3 10 1.2_4.3_10 4.15 0.41 4.3_10_2-3 101.997 22.045 1.2_4.3 10 1.2_4.3_10 3.75 0.368 4.3_100_1-1 138.691 20.58 1.2_4.3 100 1.2_4.3_100 4.51 0.468 4.3_100_1-2 123.589 26.158 1.2_4.3 100 1.2_4.3_100 4.31 0.381 4.3_100_1-3 122.562 21.308 1.2_4.3 100 1.2_4.3_100 4.51 0.49 4.3_100_1-4 72.489 14.175 1.2_4.3 100 1.2_4.3_100 2.83 0.284 4.3_100_2-1 173.567 27.521 1.2_4.3 100 1.2_4.3_100 5.69 0.609 4.3_100_2-2 82.974 17.897 1.2_4.3 100 1.2_4.3_100 3 0.256 4.3_100_2-3 138.771 22.755 1.2_4.3 100 1.2_4.3_100 4.97 0.485
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Created: 9th Apr 2022 at 18:49
Last updated: 21st Sep 2022 at 10:46
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Version 1 (earliest) Created 9th Apr 2022 at 18:49 by Marko Petek
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https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Short Name: T21_SXPsysbio Title: Use a systems biology approach to identify regulatory bottlenecks in SxPv1 Description: Samples from SXPv1.0 plants as well as sister nulls (progeny from the original transgenic event in which the transgene has segregated) and wild type will be grown and leaf samples taken for RNA extraction and profiling of primary metabolites and volatiles (target pheromones as well as potential derivatives) (P1, P5). Phenotypic and GC-MS data will be obtained and analysed from ...
Submitter: Marko Petek
Studies: Investigation files, _S_P1_SPv10T0andT1, _S_P1_SPv10T2andT3, _S_P1_SPv1TransientExp, _S_P1_SxPAltAcTransferases, _S_P1_SxPv10vsSxP12, _S_P1_SxPv12T2, _S_P4_CoExpNetViz, _S_P4_DiNAR, _S_P4_GAtreat, _S_P4_SxP10-newG-DE, _S_P4_SxP10-oldG-DE, _S_P4_SxP1012-finalG, _S_P4_SxP12-newG-DE
Assays: _A_00_SxP_photos-phenotyping, _A_01_RNA1-RNAisol, _A_01_SxP_Data_Only-CoExp, _A_01_SxPv12_fastq-QC, _A_01_mapping-CLC, _A_01_toNewGenome-CLC-mapping, _A_02_FastQC-bioinfo, _A_02_Nb_datasets-CoExp, _A_02_SxPv12_mapping-CLC, _A_02_limmavoomDE-R, _A_02a_limmavoom-multim-R, _A_02a_limmavoomDEbylines-R, _A_02b_limmavoom-uniquem-R, _A_03_MapMan-visualisation, _A_03_NewGenome-MapMan, _A_03_SxPv12_limmavoom_DE-R, _A_03_mapping-CLC, _A_03a_mapping2-STAR, _A_04_GSEA-Stat, _A_04_MapManBINenrich-GSEA, _A_04_Mercator-bioinfo, _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA, _A_05_DEstat-R, _A_05_Phenotype_analysis-Stat, _A_05_VOCcomp-Bioinfo, _A_05a_DEstat2-R, _A_05b_DElow-wt-R, _A_06_MapMan-bioinfo, _A_06_SxPv1-0_Illumina-Centrifuge, _A_07_NbAUSv1-0-InterPro, _A_07_transgenes-CLC, _A_CKN-DiNAR, _A_CKN_NbL35-DiNAR, _A_LeavesSxPv10vsv12-GCMS, _A_P4_v10v12-phenotyping, _A_PIS-DiNAR, _A_PIS-SxPv12-DiNAR, _A_PIS_NbL35-DiNAR, _A_RootsSxPv10vsv12-GCMS, _A_SP10T0Analysis-GCMS, _A_SP10T1Analysis-GCMS, _A_SPv10EaDActAnalysis-GCMS, _A_SPv10T2Analysis-GCMS, _A_SPv10T3Analysis-GCMS, _A_SPv10_phenotyping-Images, _A_SxPAlternativeAcetyltransferases-GCMS, _A_SxPv10vsv12-phenotyping, _A_SxPv12ScreeningT2-GCMS, _A_TransientSPv11andSPv12-GCMS, _I_T21_SXPsysbio-files, _S_P1_SPv10T0andT1-files, _S_P1_SPv10T2andT3-files, _S_P1_SPv1TransientExp-files, _S_P1_SxPAltAcTransferases-files, _S_P1_SxPv10vsSxP12-files, _S_P1_SxPv12T2-files, _S_P4_CoExpNetViz-files, _S_P4_DiNAR-files, _S_P4_GAtreat-files, _S_P4_SxP10-newG-DE-files, _S_P4_SxP10-oldG-DE-files, _S_P4_SxP1012-finalG-files, _S_P4_SxP12-newG-DE-files
Short Name: Gibberelin_treatment Title: GA3 treatment of SxPs Description: SxP lines were treated with 3 different GA3 concentrations (1, 10 and 100 micromolar) and control solution. WT Nb plants were used for control. From v1.0 T3, low producing line 5_2_5 and high producing line 5_1_7 were used and from v1.2 T2 lines 4_1 and 4_3. Treatment was done for 5 consecutive weeks, once per week with spraying the leaves. Raw Data: Principal investigator: Ĺ pela Baebler License: Creative Commons Attribution ...
Submitter: Marko Petek
Investigation: _I_T21_SXPsysbio
Files connected to study: _S_P4_GAtreat
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T21_SXPsysbio
Study: _S_P4_GAtreat
