Repository for omics data analysis
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Created: 19th Jul 2017 at 23:51
Last updated: 3rd Nov 2017 at 16:22
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Version 1 (earliest) Created 19th Jul 2017 at 23:51 by Malte Herold
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Projects: SysMetEx
Institutions: University of Luxembourg
The main objective of the ERANET proposal Systems Biology Applications - ERASysAPP (app = application = translational systems biology) is to promote multidimensional and complementary European systems biology projects, programmes and research initiatives on a number of selected research topics. Inter alia, ERASysAPP will initiate, execute and monitor a number of joint transnational calls on systems biology research projects with a particular focus on applications - or in other words so called ...
Projects: SysVirDrug, SysMilk, SysMetEx, MetApp, IMOMESIC, WineSys, CropClock, SYSTERACT, XyloCut, RootBook, ROBUSTYEAST, LEANPROT, ErasysApp Funders
Web page: https://www.cobiotech.eu/about-cobiotech/erasysapp
Biomining is a biotechnological process carried out in many parts of the world that exploits acid loving microorganisms to extract metals from sulphide minerals. One industrial biomining method is called ‘heap bioleaching’ where typically copper containing minerals are piled into very large heaps, acid and microorganisms are added to the top and the soluble metal is collected at the heap base.
The role of the different types of microbes in the process is to speed up metal solubilisation by oxidising ...
Programme: ERASysAPP
Public web page: http://sysmetex.eu/index.html
Experimental data and all related material for the publication "Multi -omics reveal lifestyle of acidophile, mineral-oxidizing model species Leptospirillum ferriphilumT".
Submitter: Malte Herold
Studies: Omics_data_analysis
Assays: Experimental methods, Genomics, Proteomics, RNAseq
Snapshots: Snapshot 1
This stores: Processed data files Links to raw data files Links to repositories containing applied workflows
Submitter: Malte Herold
Investigation: Multi -omics reveal lifestyle of acidophile, mi...
Assays: Experimental methods, Genomics, Proteomics, RNAseq
Snapshots: No snapshots
RNAseq data for L.ferriphilum samples
Submitter: Malte Herold
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi -omics reveal lifestyle of acidophile, mi...
Study: Omics_data_analysis
Organisms: No organisms
SOPs: No SOPs
Data files: LF_RNAseq_TPM_continuous, LF_RNAseq_TPM_mineral, LF_RNAseq_rawdata, LF_deseq_comparison, LF_omics_analysis, LF_omics_combined_Table
Snapshots: No snapshots
Proteomics data for L.ferriphilum samples (continuous and with mineral)
Submitter: Malte Herold
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi -omics reveal lifestyle of acidophile, mi...
Study: Omics_data_analysis
Organisms: No organisms
SOPs: No SOPs
Data files: LF_LFQ_comparison_ttest, LF_omics_analysis, LF_omics_combined_Table, LF_proteomics_LFQs_continuous, LF_proteomics_LFQs_mineral, LF_proteomics_LFQs_mineral_scaled, LF_proteomics_continuous_scaled, LF_proteomics_maxquant_perseus_filtered, LF_proteomics_maxquant_perseus_unfiltered, Perseus workflow t-test, Proteomics data comparing LXX cultures cultivat...
Snapshots: No snapshots