Columnwise datamatrix of reactions, gene identifiers, substrates and products. The direction of reactions is not given.
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Created: 11th Dec 2012 at 11:16
Last used: 23rd Sep 2020 at 12:18
I am a biotechnologist with main focus on theoretical studies. Currently, I am working on the implementation of a parameter estimation algorithm on GPUs to reduce the computational burden of huge ODE systems.
I am a PAL and I am looking forward to communication with other SYSMO members.
Using Taverna for mining and MATLAB for conversion into specific formats (cytoscape, SBTOOLBOX2)
Submitter: Sebastian Curth
Biological problem addressed: Model Analysis Type
Snapshots: No snapshots
Investigation: Modular Model Building
Study: Reactome Analysis
Models: No Models
SOPs: No SOPs
Data files: Network statistics of Reactome, Results of Reaction Mining, Taverna Workflow for Compound Annotation from KEGG, Taverna Workflow for Gene-Reaction-Substrate-Pr..., Visualisation of Reaction Networks in C. acetob...