This is a modified version of Biomodels89, containing a light-forcing function. This variant is configured to run cycles of LD8:16<br><br><strong>Related Publications</strong><br>ocke JC, Kozma-Bognár L, Gould PD, Fehér B, Kevei E, Nagy F, Turner MS, Hall A, Millar AJ. (2006). Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. . Mol Syst Biol . <br><br><strong>Originally submitted to PLaSMo on 2012-03-29 10:24:44</strong>
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Projects: PlaSMo model repository
Institutions: University of Edinburgh
SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Web page: http://www.synthsys.ed.ac.uk
What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.
Our aims
To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...
Programme: SynthSys
Public web page: Not specified
Organisms: Arabidopsis thaliana, Ostreococcus tauri
Collection of models submitted to PLaSMo by Richard Adams and automatically transferred to FAIRDOM Hub.
Submitter: BioData SynthSys
Studies: Modified Locke Arabadopsis 3 loop Circadian Clock - PLM_66, Neurospora Circadian Clock 3-variable model - PLM_51, Neurospora Circadian Clock 3-variable model - sinusoidal light oscillati...
Assays: Modified Locke Arabadopsis 3 loop Circadian Clock - PLM_66, version 1, Neurospora Circadian Clock 3-variable model - PLM_51, version 1, Neurospora Circadian Clock 3-variable model - sinusoidal light oscillati...
Snapshots: No snapshots
This is a modified version of Biomodels89, containing a light-forcing function. This variant is configured to run cycles of LD8:16Related Publicationsocke JC, Kozma-Bognár L, Gould PD, Fehér B, Kevei E, Nagy F, Turner MS, Hall A, Millar AJ. (2006). Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. . Mol Syst Biol . Originally submitted to PLaSMo on 2012-03-29 10:24:44
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Adams, Richard
Organisms: No organisms
Models: Modified Locke Arabadopsis 3 loop Circadian Clo..., Modified Locke Arabadopsis 3 loop Circadian Clo...
SOPs: No SOPs
Data files: Instructions on how to use the SED-ML archive f..., SEDX archive containing the model file and a si..., Simulation trace of LHY and TOc1 mRNA in LD8:16...
Snapshots: No snapshots
Data file for PLaSMo accesssion ID PLM_66, version 1
Creators: BioData SynthSys, Richard Adams
Submitter: BioData SynthSys
Investigations: Adams, Richard
Data file for PLaSMo accesssion ID PLM_66, version 1
Creators: BioData SynthSys, Richard Adams
Submitter: BioData SynthSys
Investigations: Adams, Richard
Data file for PLaSMo accesssion ID PLM_66, version 1
Creators: BioData SynthSys, Richard Adams
Submitter: BioData SynthSys
Investigations: Adams, Richard
Originally submitted model file for PLaSMo accession ID PLM_66, version 1
Creators: BioData SynthSys, Richard Adams
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: Adams, Richard
Simplified model file for PLaSMo accession ID PLM_66, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Richard Adams
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: Adams, Richard