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Created: 19th Jun 2026 at 10:02
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Collection of experiments created by Thomson Adrian on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Unpublished
Assays: AT0005 4x SD-3xLL, AT0006 4x LD-3xLL, AT0007 4x 03:21-LL, AT0009 4x 9:15-LL, AT0010 4x 15:9-LL, AT0011 4x 12:12-LL, AT0028: 4x 3:21-LL, AT0030: 4x 9:15-LL, AT0032: 4x15:9-LL, AT0033: 4x18:6-LL, AT0039: 6:18 then DD, AT0040: 4x 9:15-DD, AT0045: 4x15:9-DD, AT0046: 4x18:6-DD, AT0053: 4x3:21-LL, AT0055: 4x9:15-LL, AT0057: 4x12:12-LL, AT0059: 4x15:09-LL, AT0061: 4x18:6-LL, AT0062: 4x6:18-LL, AT0064: 4x3:21-LL, AT0066: 4x6:18-LL, AT0068: 4x3:21-DD, AT0070: 4x6:18-DD, AT0072: 4x9:15-DD, AT0073: 4x12:12-DD, AT0074: 4x15:9-DD, AT0075: 4x18:6-DD, AT0077: 4x3:21-DD, AT0079: 4x12:12-DD, AT0091: 4x12:12-LL
AT0074: 4x15:9-DD
| Property | Value |
|---|---|
| BioDare ID | 12729820597730 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 15L:9D into constant dark
Purpose
testing phase changes of clock components under different photoperiods
Comments
microwave seed sterilisation
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0075: 4x18:6-DD
| Property | Value |
|---|---|
| BioDare ID | 12729849314623 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 18L:6D into constant dark
Purpose
testing phase changes of clock components under different photoperiods
Comments
microwave seed sterilisation Pedro prepared by editing groups from previous template
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0077: 4x3:21-DD
| Property | Value |
|---|---|
| BioDare ID | 12729891771943 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 3L:21D into constant dark
Purpose
testing phase changes of clock components under different photoperiods
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0079: 4x12:12-DD
| Property | Value |
|---|---|
| BioDare ID | 12730498782920 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 12L:12D into constant dark
Purpose
testing phase changes of clock components under different photoperiods
Comments
CCR2 plate (WT, lhy;cca1 and lhy;cca1;gi) infected all over by end of experiment
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0073: 4x12:12-DD
| Property | Value |
|---|---|
| BioDare ID | 12730509509211 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 12L:12D into constant dark
Purpose
testing phase changes of clock components under different photoperiods
Comments
microwave seed sterilisation
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0028: 4x 3:21-LL
| Property | Value |
|---|---|
| BioDare ID | 12730555174222 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 3:21 blue+red into constant light, TOC1 data show anomalous dawn peak, so TOC1 data not used for phase analysis in Edwards et al. 2010
Purpose
testing circadian phase across photoperiods
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0091: 4x12:12-LL
| Property | Value |
|---|---|
| BioDare ID | 12730563219125 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 12L:12D into constant light
Purpose
testing variation of rhythmicity across camera field of view, in single seedlings with CCA1 or TOC1 marker
Comments
Original analysis by John O'Neill; Data curated by Andrew Millar.
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0055: 4x9:15-LL
| Property | Value |
|---|---|
| BioDare ID | 12730725716347 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging short days to LL in RB light
Purpose
testing short day entrainment and phase on release to LL
Comments
PRR9:LUC group dead, green colonies on 2x CCR2:LUC seedlings
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0057: 4x12:12-LL
| Property | Value |
|---|---|
| BioDare ID | 12730731549609 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 12:12 LD to LL in RB light
Purpose
testing different photoperiod effect on entrainment and phase on release to LL
Comments
CCR2:LUC in cca1 lhy and in cca1lhygi had white fungal contamination all over plate ELF3:LUC had low germination
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0059: 4x15:09-LL
| Property | Value |
|---|---|
| BioDare ID | 12730733878982 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 15:9 LD to LL in RB light
Purpose
testing different photoperiod effect on entrainment and phase on release to LL
Comments
LHy white & dead, white fungus over cca1 lhy gi CCR2 & cca1lhy gi CCR2 plate - does not affect CCR2
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0005 4x SD-3xLL
| Property | Value |
|---|---|
| BioDare ID | 12730734291594 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
alternate 4 days SD followed by 3 days constant light
Purpose
changes to photoperiod
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0006 4x LD-3xLL
| Property | Value |
|---|---|
| BioDare ID | 12730734647405 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
4 days LD followed by 3 days constant light
Purpose
changes to photoperiod
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0007 4x 03:21-LL
| Property | Value |
|---|---|
| BioDare ID | 12730735093496 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
4 days 3hrs light 21 hrs dark followed by 3 days constant
Purpose
changes to photoperiod
Comments
plate no changed comment in lab bk
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0061: 4x18:6-LL
| Property | Value |
|---|---|
| BioDare ID | 12730736018318 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 18:6 LD to LL in RB light
Purpose
testing different photoperiod effect on entrainment and phase on release to LL
Comments
CCR2 in lhycca1 and lhy cca1 gi are contaminated.
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0009 4x 9:15-LL
| Property | Value |
|---|---|
| BioDare ID | 12730736475311 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
4 days 9hrs light, 15hrs dark followed by 3 days in constant light
Purpose
changes to photoperiod
Comments
missed first image, started 11.25 am
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0010 4x 15:9-LL
| Property | Value |
|---|---|
| BioDare ID | 12730737091902 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
4 days of 15hrs light followed by 9hrs dark into constant light for 3 days
Purpose
changes to photoperiod
Comments
White fluffy infection on plate 4 - ELF3:LUC plate. Across whole plate
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0062: 4x6:18-LL
| Property | Value |
|---|---|
| BioDare ID | 12730737799143 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 6:18 LD to LL in RB light
Purpose
testing different photoperiod effect on entrainment and phase on release to LL
Comments
white fungus over cca1 lhy gi CCR2 & cca1lhy gi CCR2 plate
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0011 4x 12:12-LL
| Property | Value |
|---|---|
| BioDare ID | 12730738745576 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
4 days of 12hrs light, 12hrs dark into 3 days constant light
Purpose
changes to photoperiod
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0064: 4x3:21-LL
| Property | Value |
|---|---|
| BioDare ID | 12730739172368 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 3:21 LD to LL in RB light
Purpose
testing different photoperiod effect on entrainment and phase on release to LL
Comments
Plates wrong way round! contamination on cca1 lhy gi CCR2 & cca1lhy gi CCR2 plate
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0045: 4x15:9-DD
| Property | Value |
|---|---|
| BioDare ID | 12730741023494 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 15:9 blue+red into constant darkness
Purpose
testing acute light responses at dawn and dusk
Comments
Infection CAB, CCR2, cca1;lhy, cca1;lhy;gi, ELF4
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Thomson Adrian
Study: Unpublished
AT0053brassDerandomized_Results (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
AT0053 (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
AT0053 (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
STANDARD_DATAFILE (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
AT0053 (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Adrian Thomson
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Adrian Thomson
Submitter: Daniel Thedie
Readme file
Creator: Adrian Thomson
Submitter: Daniel Thedie
AT0072 (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
AT0072BrassDerandomized (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
AT0072 (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
AT0072 (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
STANDARD_DATAFILE.1 (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
AT0072.2 (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Adrian Thomson
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Adrian Thomson
Submitter: Daniel Thedie
Readme file
Creator: Adrian Thomson
Submitter: Daniel Thedie
AT0070 (from BioDare)
Creator: Adrian Thomson
Submitter: Daniel Thedie
