AT0005 4x SD-3xLL
| Property | Value |
|---|---|
| BioDare ID | 12730734291594 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
alternate 4 days SD followed by 3 days constant light
Purpose
changes to photoperiod
Comments
SEEK ID: https://fairdomhub.org/assays/2998
Experimental assay
Projects: BioDare1
Investigation: Thomson Adrian
Study: Unpublished
Assay position:
Assay type: Experimental Assay Type
Technology type: Technology Type
Organisms: Arabidopsis thaliana
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Creators and SubmitterViews: 62
Created: 19th Jun 2026 at 10:35
Last updated: 19th Jun 2026 at 10:39
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Projects: Millar group, BioDare1
Institutions: University of Edinburgh, School of Biological Sciences, University of Edinburgh
https://orcid.org/0000-0002-1352-7245
Expertise: Data Management, Python, R, Programming, microscopy, fluorescence protein fusions, Software Engineering
Tools: Data Management, Python, R, Fluorescence and confocal microscopy, Time-lapse fluorescence microscopy Flow cytometry, Fluorecence based reporter gene analyses/single cell analyses
Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Organisms: Not specified
Collection of experiments created by Thomson Adrian on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Unpublished
Assays: AT0005 4x SD-3xLL, AT0006 4x LD-3xLL, AT0007 4x 03:21-LL, AT0009 4x 9:15-LL, AT0010 4x 15:9-LL, AT0011 4x 12:12-LL, AT0028: 4x 3:21-LL, AT0030: 4x 9:15-LL, AT0032: 4x15:9-LL, AT0033: 4x18:6-LL, AT0039: 6:18 then DD, AT0040: 4x 9:15-DD, AT0045: 4x15:9-DD, AT0046: 4x18:6-DD, AT0053: 4x3:21-LL, AT0055: 4x9:15-LL, AT0057: 4x12:12-LL, AT0059: 4x15:09-LL, AT0061: 4x18:6-LL, AT0062: 4x6:18-LL, AT0064: 4x3:21-LL, AT0066: 4x6:18-LL, AT0068: 4x3:21-DD, AT0070: 4x6:18-DD, AT0072: 4x9:15-DD, AT0073: 4x12:12-DD, AT0074: 4x15:9-DD, AT0075: 4x18:6-DD, AT0077: 4x3:21-DD, AT0079: 4x12:12-DD, AT0091: 4x12:12-LL
Snapshots: No snapshots
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Thomson Adrian
Assays: AT0005 4x SD-3xLL, AT0006 4x LD-3xLL, AT0007 4x 03:21-LL, AT0009 4x 9:15-LL, AT0010 4x 15:9-LL, AT0011 4x 12:12-LL, AT0028: 4x 3:21-LL, AT0030: 4x 9:15-LL, AT0032: 4x15:9-LL, AT0033: 4x18:6-LL, AT0039: 6:18 then DD, AT0040: 4x 9:15-DD, AT0045: 4x15:9-DD, AT0046: 4x18:6-DD, AT0053: 4x3:21-LL, AT0055: 4x9:15-LL, AT0057: 4x12:12-LL, AT0059: 4x15:09-LL, AT0061: 4x18:6-LL, AT0062: 4x6:18-LL, AT0064: 4x3:21-LL, AT0066: 4x6:18-LL, AT0068: 4x3:21-DD, AT0070: 4x6:18-DD, AT0072: 4x9:15-DD, AT0073: 4x12:12-DD, AT0074: 4x15:9-DD, AT0075: 4x18:6-DD, AT0077: 4x3:21-DD, AT0079: 4x12:12-DD, AT0091: 4x12:12-LL
Snapshots: No snapshots
AT0005b (from BioDare)
AT0005 (from BioDare)
AT0005b_BRASSDerandomizedDetren (from BioDare)
AT0005b_BRASSDerandomized (from BioDare)
AT0005b_BRASS (from BioDare)
AT0005 (from BioDare)
STANDARD_DATAFILE.1 (from BioDare)
STANDARD_RAWDATAFILE (from BioDare)
AT0005.1 (from BioDare)
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Original BioDare metadata, converted to json format
Readme file
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