Wenden et al. (2012)

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Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf

DOI: 10.1073/pnas.1118814109

SEEK ID: https://fairdomhub.org/studies/1487

Investigation: Wenden Benedicte

Projects: BioDare1

Study position:

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Creators and Submitter

Creators

Not specified

Submitter

Daniel Thedie

Activity

Views: 52

Created: 18th Jun 2026 at 13:01

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Daniel Thedie

Projects: Millar group, BioDare1

Institutions: University of Edinburgh, School of Biological Sciences, University of Edinburgh

https://orcid.org/0000-0002-1352-7245

Expertise: Data Management, Python, R, Programming, microscopy, fluorescence protein fusions, Software Engineering

Tools: Data Management, Python, R, Fluorescence and confocal microscopy, Time-lapse fluorescence microscopy Flow cytometry, Fluorecence based reporter gene analyses/single cell analyses

Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.

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Centre for Engineering Biology (prev. SynthSys)

The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.

Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1

Web page: https://biology.ed.ac.uk/centre-engineering-biology

Advanced Projects list for this Study with search and filtering

BioDare1

Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).

Programme: Centre for Engineering Biology (prev. SynthSys)

Public web page: Not specified

Organisms: Not specified

Advanced Investigations list for this Study with search and filtering

Wenden Benedicte

BioDare1

Collection of experiments created by Wenden Benedicte on the original BioDare and automatically transferred to FAIRDOM Hub.

Created: 18th Jun 2026 at 13:01

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BW-detached_LL-LL_#20

BioDare1

BW-detached_LL-LL_#20

Property	Value
BioDare ID	13394437504756
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Detached leaves of CCA1:LUC grown and imaged under constant light. Sample number 20 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Plant20, README, Readme, Sample_list, detachedleaf_3

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:01, Last updated: 18th Jun 2026 at 13:03

BW-intact_LL-LL_#58

BioDare1

BW-intact_LL-LL_#58

Property	Value
BioDare ID	13394446996851
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 58 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, CCA1LL_4, Plant58, README, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:03, Last updated: 18th Jun 2026 at 13:05

BW-intact_LD-LL_#23

BioDare1

BW-intact_LD-LL_#23

Property	Value
BioDare ID	13394434885385
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown under LD and imaged under constant light. Sample number 23 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, CCA1LDintoLL_4, Plant23, README, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:05, Last updated: 18th Jun 2026 at 13:07

BW-intact_LL-LD_#31

BioDare1

BW-intact_LL-LD_#31

Property	Value
BioDare ID	13394443003897
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown under constant light and imaged under LD. Plant number 31 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, CCA1LLintoLD_22, Plant31, README, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:07, Last updated: 18th Jun 2026 at 13:08

BW-intact_LL-LL_#37

BioDare1

BW-intact_LL-LL_#37

Property	Value
BioDare ID	13394444364628
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 37 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, CCA1LL_6, Plant37, README, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:09, Last updated: 18th Jun 2026 at 13:11

BW-intact_LL-LL_#56

BioDare1

BW-intact_LL-LL_#56

Property	Value
BioDare ID	13394446929060
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 56 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, CCA1LL_6, Plant56, README, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:11, Last updated: 18th Jun 2026 at 13:12

BW-intact_LL-LL_#46

BioDare1

BW-intact_LL-LL_#46

Property	Value
BioDare ID	13394446784669
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 46 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, CCA1LL_4, Plant46, README, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:13, Last updated: 18th Jun 2026 at 13:14

BW-detached_LD-LL_#03

BioDare1

BW-detached_LD-LL_#03

Property	Value
BioDare ID	13394379875121
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Detached leaves of CCA1:LUC grown in LD and imaged under constant light. Sample number 03 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, CCA1LDgrownLLimaged_7, Plant03, README, Readme, Sample_list, Toner PNAS 12 all

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:15, Last updated: 18th Jun 2026 at 13:17

BW-detached_LL-LL_#16

BioDare1

BW-detached_LL-LL_#16

Property	Value
BioDare ID	13394383188744
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Detached leaves of CCA1:LUC grown and imaged under constant light. Sample number 16 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, CCA1LL_5, Plant16, README, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:17, Last updated: 18th Jun 2026 at 13:19

BW-detached_LD-LL_#06

BioDare1

BW-detached_LD-LL_#06

Property	Value
BioDare ID	13394381111502
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Detached leaves of CCA1:LUC grown in LD and imaged under constant light. Sample number 06 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, CCA1LDintoLL_3, Plant06, README, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:19, Last updated: 18th Jun 2026 at 13:21

BW-detached_LL-LL_#14

BioDare1

BW-detached_LL-LL_#14

Property	Value
BioDare ID	13394382079593
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Detached leaves of CCA1:LUC grown and imaged under constant light. Sample number 14 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.