Organoid co-culture model of the cycling human endometrium in a fully-defined synthetic extracellular matrix reveals epithelial-stromal crosstalk
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Juan S. Gnecco, Alexander Brown, Kira Buttrey, Clara Ives, Brittany A. Goods, Lauren Baugh, Victor Hernandez-Gordillo, Megan Loring, Keith Isaacson, Linda G. Griffith
https://doi.org/10.1101/2021.09.30.462577
The human endometrium undergoes recurring cycles of growth, differentiation, and breakdown in response to sex hormones. Dysregulation of epithelial-stromal communication during hormone cycles is linked to myriad gynecological disorders for which treatments remain inadequate. Here, we describe a completely defined, synthetic extracellular matrix that enables co-culture of human endometrial epithelial and stromal cells in a manner that captures healthy and disease states across a simulated menstrual cycle. We parsed cycle-dependent endometrial integrin expression and matrix composition to define candidate cell-matrix interaction cues for inclusion in a polyethylene glycol (PEG)-based hydrogel crosslinked with matrix metalloproteinase-labile peptides. We semi-empirically screened a parameter space of biophysical and molecular features representative of the endometrium to define compositions suitable for hormone-driven expansion and differentiation of epithelial organoids, stromal cells, and co-cultures of the two cell types. Each cell type exhibited characteristic morphological and molecular responses to hormone changes when co-encapsulated in hydrogels tuned to a stiffness regime similar to the native tissue and functionalized with a collagen-derived adhesion peptide (GFOGER) and a fibronectin-derived peptide (PHSRN-K-RGD). Analysis of cell-cell crosstalk during IL-1β-induced inflammation revealed dysregulation of epithelial proliferation mediated by stromal cells. Altogether, we demonstrate the development of a fully synthetic matrix to sustain the dynamic changes of the endometrial microenvironment and support its applications to understand menstrual health and endometriotic diseases.
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Created: 24th Feb 2023 at 20:09
Last updated: 17th Nov 2023 at 21:20
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Projects: Hi-IMPAcTB, MIT SRP, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC)
Institutions: Massachusetts Institute of Technology
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Endometriosis research done by the Griffith lab (MIT) and the Goods lab (Dartmouth)
Programme: Independent Projects
Public web page: Not specified
Organisms: Not specified
Submitter: Charles Demurjian
Studies: Integrating endometrial proteomic and single cell transcriptomic pipelin..., Organoid co-culture model of the cycling human endometrium in a fully-de...
Assays: All Metadata, All Metadata, Cell Culture Imaging - Data Linked, Cell Culture and Organoid Generation - Metadata, DNA Extraction - Metadata, DNA Extraction - Metadata, Elisa - Data Linked, Gene Expression Analysis - Data Linked, Immunohistochemistry - Data Linked, Linear Mixed Model - Data Linked, Luminex - Data Linked, Mass Spectrometry Proteomics - Data Linked, Mass Spectrometry Proteomics Analysis - Data Linked, Patient Visit - Metadata, Patient Visit - Metadata, Short Read Sequencing - Data Linked, Single Cell Expression Matrix Analysis - Data Linked, Single Cell Sequencing - Data Linked, Tissue Collection - Metadata, Tissue Collection - Metadata
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Endometriosis
Organisms: No organisms
SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx
Data files: samples-publish2023-11-03_PAT.xlsx, samples-publish2023-11-03_PAV.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Endometriosis
Organisms: No organisms
SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx, P.GRI-231030-V1_Tissue_Protocol
Data files: samples-publish2023-11-03_PAV.xlsx, samples-publish2023-11-03_TIS.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Endometriosis
Organisms: No organisms
SOPs: P.GRI-231030-V1_Cell_Culture_and_Organoid_Gener...
Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_TIS.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Endometriosis
Organisms: No organisms
SOPs: P.GRI-231101-V1_RNA-isolation-and-bulk-RNA-seq
Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_DNA_2.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Endometriosis
Organisms: No organisms
SOPs: P.GRI-231101-V1_RNA-isolation-and-bulk-RNA-seq
Data files: samples-publish2023-11-03_D.SEQ_CEL.xlsx, samples-publish2023-11-03_DNA_2.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Endometriosis
Organisms: No organisms
SOPs: P.GRI-231107-V1_Bulk-RNAseq-analysis-of-in-vitr...
Data files: samples-publish2023-11-03_A.GEX.xlsx, samples-publish2023-11-03_D.SEQ_CEL.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Endometriosis
Organisms: No organisms
SOPs: P.GRI-231030-V4_Imaging_Protocol
Data files: samples-publish2023-11-03_AB_IMF.xlsx, samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.IMG_CCI.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Endometriosis
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.LMX.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Endometriosis
Organisms: No organisms
SOPs: P.GRI-231103-V1_ELISA_Luminex_Protocol
Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.ELISA.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Endometriosis
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Studies: Organoid co-culture model of the cycling human ...
Assays: Gene Expression Analysis - Data Linked, Short Read Sequencing - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Studies: Organoid co-culture model of the cycling human ...
Assays: Elisa - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Studies: Organoid co-culture model of the cycling human ...
Assays: DNA Extraction - Metadata, Short Read Sequencing - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Studies: Organoid co-culture model of the cycling human ...
Assays: Luminex - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Studies: Integrating endometrial proteomic and single ce..., Organoid co-culture model of the cycling human ...
Assays: Cell Culture and Organoid Generation - Metadata, DNA Extraction - Metadata, Immunohistochemistry - Data Linked, Mass Spectrometry Proteomics - Data Linked, Tissue Collection - Metadata, Tissue Collection - Metadata
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Studies: Organoid co-culture model of the cycling human ...
Assays: Elisa - Data Linked
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Creator: Charles Demurjian
Submitter: Charles Demurjian
Creator: Charles Demurjian
Submitter: Charles Demurjian
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis
Studies: Organoid co-culture model of the cycling human ...
Assays: DNA Extraction - Metadata, Short Read Sequencing - Data Linked
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: Endometriosis