A.VCF-260403BMC-7
NA12878_NoDye_Replicate-1_call_m_ac1.vcf.gz
A.ALN-260403BMC-4
6da279302ba31cf2fc5a738fb1b89f48
raw
https://fairdomhub.org/sops/899
Raw variant calls for no-dye control condition. Unfiltered bcftools mpileup output.
Vincent Butty
bcftools mpileup v1.10.2+htslib-1.10.2
GRCh38_GIABv3_no_alt_analysis_set (GIAB masked decoys)
Not specified
Not specified
Creators and Submitter
Views: 11
Created: 15th Apr 2026 at 19:28
Last updated: 15th Apr 2026 at 19:34
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Projects: MIT SRP, Hi-IMPAcTB, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC), Shoulders Lab, NExtSEEK Independent Projects
Web page: https://nextseek.mit.edu/
Programme: NExtSEEK
Public web page: Not specified
Vincent L. Butty, Pranav Patel, Stuart S. Levine
DOI:
Abstract: DNA labelling fluorescent dyes such as ethidium bromide have long been considered to be highly mutagenic during DNA replication. While recent studies have pushed back on this narrative, the intercalative nature of these dyes continues to raise the possibility that these dyes can induce mutations. The iconPCR instrument by n6tec uses fluorescent dyes to measure amplification in real time and to ...
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: BioMicro Center
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: BioMicro Center
