D.SEQ-250605SHO-13

Overview
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Source data: samples-250609-SC-R719C-D.SEQ.xlsx

UID : D.SEQ-250605SHO-13

File_PrimaryData : 210322Sho_D21-157091_sequence_1.fastq.gz

File_SecondaryData : 210322Sho_D21-157091_sequence_2.fastq.gz

Protocol : https://fairdomhub.org/sops/833

Scientist : MIT BioMicro Center

Link_PrimaryData : https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1

Link_SecondaryData : https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs004112.v1.p1

Checksum_PrimaryData : 9ed163f950d38fc7e40bc79ebacf0e9d

Checksum_SecondaryData : 1d11ed4df566d978918d09100bdcde3b

Parent : DNA-250605SHO-13

DataType : FASTQ

SequencingType : ShortRead

Sequencer : Illumina NextSeq500

F_bp : 20

R_bp : 57

LibraryStrategy : RNA-Seq

LibrarySource : TRANSCRIPTOMIC

LibrarySelection : RT-PCR

LibraryDesign : paired

Accession : phs004112.v1.p1

Repository : dbGaP

Creators and Submitter

Creators

Not specified

Submitter

Charles Demurjian

Activity

Views: 7

Created: 5th Aug 2025 at 20:40

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Advanced People list for this Sample with search and filtering

Charles Demurjian

Projects: Hi-IMPAcTB, MIT SRP, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC), Shoulders Lab

Institutions: Massachusetts Institute of Technology

Advanced Programmes list for this Sample with search and filtering

NExtSEEK

No description specified

Projects: MIT SRP, Hi-IMPAcTB, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC), Shoulders Lab

Web page: https://nextseek.mit.edu/

Advanced Projects list for this Sample with search and filtering

Shoulders Lab

Shoulders Lab Collagen Publications

Programme: NExtSEEK

Public web page: Not specified

Organisms: Not specified

Advanced Investigations list for this Sample with search and filtering

Shoulders Lab Individual Publications

Shoulders Lab

No description specified

Submitter: Charles Demurjian

Studies: Human cartilage model of the precocious osteoarthritis-inducing COL2A1 p...

Assays: All Metadata, Cell Imaging - Data Linked, Gene Expression Analysis - Data Linked, LC - MS/MS (Proteomics) - Data Linked, Library Creation - Metadata, Proteomics Analysis - Data Linked, RNA Extraction - Metadata, Short Read Sequencing - Data Linked, iPSC Culture and Chondronoid Formation - Metadata

Snapshots: No snapshots

Created: 3rd Jun 2025 at 15:39, Last updated: 10th Jun 2025 at 15:16

Advanced Studies list for this Sample with search and filtering

Human cartilage model of the precocious osteoarthritis-inducing COL2A1 p.R719C reveals pathology-driving matrix defects and a failure of the ER proteostasis network to recognize the defective procollagen-II

Shoulders Lab

Kathryn M. Yammine, Sophia Mirda Abularach, Michael Xiong, Seo-yeon Kim, Agata A. Bikovtseva, Vincent L. Butty, Richard P. Schiavoni, John F. Bateman, Shireen R. Lamandé, and Matthew D. Shoulders

A dbGaP Submission is underway and metadata will be updated at the completion of submission. The remaining of the data and metadata are available here.