D.MSP-250606SHO-2

Overview
Related items

Source data: samples-250609-SC-R719C-D.MSP.xlsx

UID : D.MSP-250606SHO-2

File_PrimaryData : f.MSV000096151/peak/rs240609_1505_KY_10plex_01.mzML

Link_PrimaryData : ftp://massive-ftp.ucsd.edu/v07/MSV000096151/

Parent : CEL-250606SHO-2; CEL-250606SHO-3

SampleCreationDate : 2024-06-09T0:0:0+0000

Protocol : https://fairdomhub.org/sops/835

Method : LC-MS/MS

Instrument : Orbitrap Eclipse Tribrid (Thermo Scientific)

Scientist : Kathryn Yammine

Repository : MassIVE

RepositoryID : MSV000096151

PRIDE_FileType : Peak

PRIDE_ExperimentType : Shotgun proteomics

PRIDE_Modification : Oxidation

PRIDE_Quantification : TMTpro16plex

MetadataFile : f.MSV000096151/ccms_parameters/params.xml

ScanFile : f.MSV000096151/ccms_metadata/ccms_peak/rs240609_1505_KY_10plex_01.mzML.scans

Software : Proteome Discoverer 2.4

Identification : SEQUEST

Creators and Submitter

Creators

Not specified

Submitter

Charles Demurjian

Activity

Views: 16

Created: 9th Jun 2025 at 15:49

Related items

Advanced People list for this Sample with search and filtering

Charles Demurjian

Projects: Hi-IMPAcTB, MIT SRP, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC), Shoulders Lab

Institutions: Massachusetts Institute of Technology

Advanced Programmes list for this Sample with search and filtering

NExtSEEK

No description specified

Projects: MIT SRP, Hi-IMPAcTB, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC), Shoulders Lab

Web page: https://nextseek.mit.edu/

Advanced Projects list for this Sample with search and filtering

Shoulders Lab

Shoulders Lab Collagen Publications

Programme: NExtSEEK

Public web page: Not specified

Organisms: Not specified

Advanced Investigations list for this Sample with search and filtering

Shoulders Lab Individual Publications

Shoulders Lab

No description specified

Submitter: Charles Demurjian

Studies: Human cartilage model of the precocious osteoarthritis-inducing COL2A1 p..., In vivo directed evolution of an ultrafast Rubisco from a semianaerobic ...

Assays: Cell Imaging - Data Linked, Gene Expression Analysis - Data Linked, LC - MS/MS (Proteomics) - Data Linked, Library Creation - Metadata, Proteomics Analysis - Data Linked, RNA Extraction - Metadata, Short Read Sequencing - Data Linked, iPSC Culture and Chondronoid Formation - Metadata

Snapshots: No snapshots

Created: 3rd Jun 2025 at 15:39, Last updated: 10th Jun 2025 at 15:16

Advanced Studies list for this Sample with search and filtering

Human cartilage model of the precocious osteoarthritis-inducing COL2A1 p.R719C reveals pathology-driving matrix defects and a failure of the ER proteostasis network to recognize the defective procollagen-II

Shoulders Lab

Kathryn M. Yammine, Sophia Mirda Abularach, Michael Xiong, Seo-yeon Kim, Agata A. Bikovtseva, Vincent L. Butty, Richard P. Schiavoni, John F. Bateman, Shireen R. Lamandé, and Matthew D. Shoulders

A dbGaP Submission is underway and metadata will be updated at the completion of submission. The remaining of the data and metadata are available here.