Data files

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338 Data files visible to you, out of a total of 354

/reports/summaryCounts&SJ.xlsx

_p_stRT

coverage and uniquely mapped spliced reads summary

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3760.1

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

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Created: 2nd Jun 2020 at 13:42

/output/samtoolsCoverage.zip

_p_stRT

samtools coverage https://www.htslib.org/doc/samtools-coverage.html

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

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Created: 2nd Jun 2020 at 13:29

/output/annot_stPanTr_rep.cds.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 23rd Mar 2020 at 10:28, Last updated: 12th Apr 2020 at 11:54

/output/annot_stPanTr_rep.aa.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 23rd Mar 2020 at 10:28, Last updated: 12th Apr 2020 at 11:53

/output/annot_stPanTr.cds.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 23rd Mar 2020 at 10:27, Last updated: 12th Apr 2020 at 11:53

/output/annot_stPanTr.aa.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 23rd Mar 2020 at 10:26, Last updated: 12th Apr 2020 at 11:48

/output/annot_stCuSTr-R_tr_representatives.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 22nd Mar 2020 at 23:23, Last updated: 12th Apr 2020 at 11:46

/output/annot_stCuSTr-R_tr_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 22nd Mar 2020 at 23:23, Last updated: 12th Apr 2020 at 11:45

/output/annot_stCuSTr-R_cds_representatives.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:22, Last updated: 12th Apr 2020 at 11:44

/output/annot_stCuSTr-R_cds_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:22, Last updated: 12th Apr 2020 at 11:44

/output/annot_stCuSTr-R_aa_representatives.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:22, Last updated: 12th Apr 2020 at 11:43

/output/annot_stCuSTr-R_aa_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:21, Last updated: 12th Apr 2020 at 11:42

/output/annot_stCuSTr-P_tr_representatives.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:21, Last updated: 12th Apr 2020 at 11:35

/output/annot_stCuSTr-P_tr_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:20, Last updated: 12th Apr 2020 at 11:34

/output/annot_stCuSTr-P_cds_representatives.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:20, Last updated: 12th Apr 2020 at 11:34

/output/annot_stCuSTr-P_cds_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:19, Last updated: 12th Apr 2020 at 11:32

/output/annot_stCuSTr-P_aa_representatives.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:19, Last updated: 12th Apr 2020 at 11:31

/output/annot_stCuSTr-P_aa_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:18, Last updated: 12th Apr 2020 at 11:31

/output/annot_stCuSTr-D_tr_representatives.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:18, Last updated: 12th Apr 2020 at 11:30

/output/annot_stCuSTr-D_tr_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:17, Last updated: 12th Apr 2020 at 11:30

/output/annot_stCuSTr-D_cds_representatives.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:16, Last updated: 12th Apr 2020 at 11:29

/output/annot_stCuSTr-D_cds_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:15, Last updated: 12th Apr 2020 at 11:28

/output/annot_stCuSTr-D_aa_representatives.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:15, Last updated: 12th Apr 2020 at 11:27

/output/annot_stCuSTr-D_aa_all.zip

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 22nd Mar 2020 at 23:15, Last updated: 12th Apr 2020 at 11:27

/scripts/annotate.sh

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 23rd Mar 2020 at 10:29, Last updated: 12th Apr 2020 at 11:17

/reports/SupplementaryTableS8

_p_stRT

Supplementary Table S8 - Read count summary for Désirée drought samples mapped to the representative Phureja DM and Désirée reference transcriptomes. Layer _p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping/reports/

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3722.2

Investigations: _I_STRT

Studies: SupplementaryInformation, _S_04_stPanTr

Assays: Supplementary Information, _A_07_Desiree-mapping

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Created: 8th Apr 2020 at 16:30, Last updated: 12th Apr 2020 at 10:28

/output/PGSC_drought123/DM_Aligned.sortedByCoord.out.counts

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

Download

Created: 12th Apr 2020 at 09:51

/output/Desiree_drought123/Desiree_Aligned.sortedByCoord.out.counts

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

Download

Created: 12th Apr 2020 at 09:49, Last updated: 12th Apr 2020 at 09:50

/output/rep.cds.IDs

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_components_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_03_components_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:55, Last updated: 12th Apr 2020 at 09:32

/output/rep.aa.IDs

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_components_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_03_components_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:55, Last updated: 12th Apr 2020 at 09:31

(v.1.16.0-pre)

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