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338 Data files visible to you, out of a total of 354

/output/short_summary_BUSCO_Solanum_tuberosum-ITAG_DM_v1_pep.fasta_solanaceae_odb10.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04_BUSCO_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04_BUSCO_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:56, Last updated: 19th Mar 2020 at 10:56

/output/short_summary_BUSCO_Solanum_tuberosum-ITAG_DM_v1_pep.fasta_embryophyta_odb9.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04_BUSCO_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04_BUSCO_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:56, Last updated: 19th Mar 2020 at 10:56

/output/BUSCO_stPanTr_solanaceae_odb10.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04_BUSCO_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04_BUSCO_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:56, Last updated: 19th Mar 2020 at 10:56

/output/BUSCO_stPanTr_embryophyta_odb9.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04_BUSCO_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04_BUSCO_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:56, Last updated: 19th Mar 2020 at 10:56

/output/Solanum_tuberosum_PGSC_DM_v4.04_CDS-to-AA_converter.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_components_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_03_components_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:55, Last updated: 19th Mar 2020 at 10:55

/input/path_to_files.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_components_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_03_components_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:55, Last updated: 19th Mar 2020 at 10:55

/scripts/01.2_commands-CDHIT-2D.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:54, Last updated: 19th Mar 2020 at 10:54

/scripts/01.1_commands-CDHIT-EST.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:54, Last updated: 19th Mar 2020 at 10:54

/output/trueSingle.polyploid.ID

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:52, Last updated: 19th Mar 2020 at 10:52

/output/trueSingle.DM.ID

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:52, Last updated: 19th Mar 2020 at 10:52

/intermediate/stPanTr_aa_singletons_tetra_on_DM_aS.45_c.90.clstr

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:50, Last updated: 19th Mar 2020 at 10:50

/intermediate/stPanTr_aa_singletons_DM_on_tetra_aS.45_c.90.clstr

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:50, Last updated: 19th Mar 2020 at 10:50

/intermediate/stCuSTr_cds_repAlt_cdhitEST-conda_aS.75_c.90.clstr

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:50

/intermediate/singletons.tetra.seqID.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:50, Last updated: 19th Mar 2020 at 10:50

/intermediate/singletons.seqID.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:50

/intermediate/singletons.DM.seqID.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/input/StPGSC4.04n_seq_4_PGSC-p-rep_ITAG-pep_gff-2019-04-23.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49

/input/Solanum_tuberosum_PGSC_DM_v4.04_converterWithDescriptions.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49

/input/Solanum_tuberosum_ITAG_DM_v1_descriptions_v2.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/input/path_to_files.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/scripts/tab_to_fasta.py

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/scripts/GC_content.py

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:49, Last updated: 19th Mar 2020 at 10:49

/output/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gff-2019-04-23.GC_len.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:48

/output/Solanum_tuberosum_PGSC_merged.CDS_GC.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/output/Solanum_tuberosum-ITAG_DM_v1_cds_GC.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/input/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gff-2019-04-23.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/input/Solanum_tuberosum_PGSC_merged.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

Download

Created: 19th Mar 2020 at 10:48

/input/Solanum_tuberosum-ITAG_DM_v1_cds.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_GC_content-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_01_GC_content-count

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Created: 19th Mar 2020 at 10:48

/output/Rywal_tr.cds.tsv.gz

_p_stRT

Supplementary Table S5 Rywal biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Rywal.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3112.1

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 18:19, Last updated: 18th Mar 2020 at 18:26

/output/Desiree_tr.cds.tsv.gz

_p_stRT

Supplementary Table S3 Désirée biological evidence filtering results. Output of 1st filtering step by biological evidence for cv. Désirée.

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

DOI: 10.15490/fairdomhub.1.datafile.3110.1

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 18:15, Last updated: 18th Mar 2020 at 18:25

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