Assays

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7 Assays visible to you, out of a total of 7

Metabolic modeling of EbN1

EbN1 Systems Biology

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All flux balance analyses of the stoichiometric model

Submitter: Julia Koblitz

Biological problem addressed: Modelling analysis

Investigation: Systems biology investigation of aromatic compo...

Study: Metabolic Modelling

Organisms: Aromatoleum aromaticum : EbN1T (wild-type / wild-type)

Models: EbN1 stoichiometric model iAA835 (Metano), EbN1 stoichiometric model iAA835 (SBML)

SOPs: No SOPs

Data files: Model | Biomass composition, Model | Flux balance analysis (FBA), Model | Simulation parameters and results

Snapshots: No snapshots

Created: 15th Jul 2022 at 06:32, Last updated: 13th Oct 2022 at 07:44

Scenario files for Metano metabolic modeling

EbN1 Systems Biology

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All files for metabolic modeling using the Metano toolbox, including the scenarios and flux balance analyses.

Submitter: Julia Koblitz

Biological problem addressed: Model Analysis Type

Investigation: Systems biology investigation of aromatic compo...

Study: Metabolic Modelling

Organisms: No organisms

Models: EbN1 stoichiometric model iAA835 (Metano)

SOPs: No SOPs

Data files: Model - Scenario - 3-HBz aerobic, Model - Scenario - 3-HBz anaerobic, Model - Scenario - 4HPP aerobic, Model - Scenario - 4HPP anaerobic, Model - Scenario - Acetate aerobic, Model - Scenario - Acetate anaerobic, Model - Scenario - Benzoate aerobic, Model - Scenario - Benzoate anaerobic, Model - Scenario - Phenylalanine aerobic, Model - Scenario - Phenylalanine anaerobic

Snapshots: No snapshots

Created: 15th Jul 2022 at 06:07, Last updated: 13th Oct 2022 at 07:43

Metabolome analysis: phenol vs D-glucose

SulfoSys - Biotec

No description specified

Submitter: Jacqueline Wolf

Assay type: Experimental Assay Type

Technology type: Gas Chromatography

Investigation: Phenol degradation in Saccharolobus solfataricu...

Study: Comparison of S. solfataricus P2 grown on pheno...

Organisms: Sulfolobus solfataricus

SOPs: No SOPs

Data files: Metabolome analysis phenol vs glucose

Snapshots: No snapshots

Created: 23rd Jul 2020 at 13:53, Last updated: 16th Dec 2020 at 16:08

Metabolome analysis: Casaminoacids versus D-Glc

SulfoSys - Biotec

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Intracellular and extracellular metabolome analysis

Submitter: Jacqueline Wolf

Assay type: Metabolite Profiling

Technology type: Gas Chromatography Mass Spectrometry

Investigation: Amino acid degradation in Sulfolobus solfataric...

Study: Comparison of Sulfolobus solfataricus P2 grown ...

Organisms: Sulfolobus solfataricus

SOPs: No SOPs

Data files: Amino acid depletion profile of S. solfataricus..., Calculation of amino acid uptake rates, Integrated summary of transcriptomics and prote..., Metabolomics Casaminoacids vs Glc

Snapshots: No snapshots

Created: 7th Aug 2016 at 16:31, Last updated: 18th Oct 2018 at 09:38

Metabolic modelling of S. solfataricus during growth on casaminoacids

SulfoSys - Biotec

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Growth on D-glucose served as reference scenario

Submitter: Jacqueline Wolf

Biological problem addressed: Genome Scale

Investigation: Amino acid degradation in Sulfolobus solfataric...

Study: Comparison of Sulfolobus solfataricus P2 grown ...

Organisms: Sulfolobus solfataricus

Models: Metabolic model of Sulfolobus solfataricus

SOPs: No SOPs

Data files: Biomass composition of S. solfataricus P2 grown..., Calculation of amino acid uptake rates, Description of changes made to the model compar..., Distribution of enzymes involved in oxidative S...

Snapshots: No snapshots

Created: 7th Aug 2016 at 17:19, Last updated: 18th Oct 2018 at 09:38

intracellular metabolome analysis: l-fucose vs d-glucose

SulfoSys - Biotec

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No description specified

Submitter: Theresa Kouril

Assay type: Metabolite Profiling

Technology type: Gas Chromatography Mass Spectrometry

Investigation: L-fucose degradation in Sulfolobus solfataricus P2

Study: Comparison of S. solfataricus grown on l-fucose...

Organisms: Sulfolobus solfataricus

SOPs: No SOPs

Data files: Metabolomics L-fuc vs D-glc

Snapshots: No snapshots

Created: 5th Feb 2015 at 11:51, Last updated: 8th Nov 2017 at 14:21

Metabolic model of Sulfolobus solfataricus

SulfoSys - Biotec

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Genome scale metabolic model of Sulfolobus solfataricus specific scenario: modelling of L-fucose degradation pathways

Submitter: Jacqueline Wolf

Biological problem addressed: Metabolic Network

Investigation: L-fucose degradation in Sulfolobus solfataricus P2

Study: Comparison of S. solfataricus grown on l-fucose...

Organisms: Sulfolobus solfataricus

Models: Metabolic model of Sulfolobus solfataricus

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 3rd Dec 2015 at 07:41, Last updated: 8th Nov 2017 at 14:21

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